Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120848.seq
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    23   2.7  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   3.5  

>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
          protein 17 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 40 KILFVIFQCLQFF 2
          K+LFV+F C+Q +
Sbjct: 3  KVLFVVFACVQAY 15


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 198 IYLMTTLVSDXVIYKTSHVYVVQTNFVN 115
           +YL+  +++  V+Y+   +  V T++VN
Sbjct: 137 VYLLPIIINPLVLYEARKLANVVTDWVN 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,831
Number of Sequences: 336
Number of extensions: 2080
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)