Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120847.seq
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.78 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   4.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 252 FICFNLGILFCLCLTSLGVYIVII 323
           FI FN+ +LF LCL    ++++ +
Sbjct: 186 FIFFNMHLLFLLCLDYFTLHLLFL 209



 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 207 YFIIITLKFNSLYI*FICFNLGILFCLCL 293
           Y  II L     Y  FI F + +LF LC+
Sbjct: 105 YAFIILLCVYYFYYAFIIFTVHLLFLLCI 133



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +3

Query: 204 IYFIIITLKF----NSLYI*FICFNLGILFCLCL 293
           IY+ ++ L F       Y  FI F + +LF LC+
Sbjct: 133 IYYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCI 166



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 252 FICFNLGILFCLCLTSLGVYIVII 323
           FI F + +LF LC+      ++I+
Sbjct: 272 FIIFTMHLLFLLCIYYFYCALIIL 295


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 258 CFNLGILFCLC--LTSLGVYIVIIAGWSSNSNYA 353
           C NL I +C+C  + S  ++ + I G + + N A
Sbjct: 40  CLNLSINYCICGYIFSAILFSLSILGLTEDLNSA 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,026
Number of Sequences: 336
Number of extensions: 1474
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)