Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120845.seq
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.6  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   9.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.6  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 88  VAAPYPRALAPYCCRYKY 35
           VAA +PR   P  C+Y Y
Sbjct: 179 VAATHPRYADPDDCQYFY 196


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 121 IVSFDACITYKSPCSP 168
           ++++  C+  K PCSP
Sbjct: 53  LLNYINCLLEKGPCSP 68


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 519 KKHSRHHKPEH 551
           ++H +HH+P H
Sbjct: 173 EQHPQHHQPHH 183


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 519 KKHSRHHKPEH 551
           ++H +HH+P H
Sbjct: 175 EQHPQHHQPHH 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,082
Number of Sequences: 336
Number of extensions: 3360
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)