Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120845.seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   4.5  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   5.9  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 468  EVFTSGTQRLYTALRNYKKHSRHHKPEHV 554
            E++TS TQ L  A+RNY       K  H+
Sbjct: 1354 ELYTSATQYLEEAIRNYAALGVKQKARHL 1382


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 64  MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPXAY 177
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 532 LECFL*LRNAVYNRCVPLVK---TSVYFRLXH 446
           +E F+ L + +Y  CVP+++   TS+ F + H
Sbjct: 333 IELFIRLYSQMYRHCVPIIEIYDTSIKFYMKH 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,434
Number of Sequences: 5004
Number of extensions: 54873
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)