Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120845.seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        29   4.7  
SB_45379| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_5553| Best HMM Match : Toxin_20 (HMM E-Value=4.6)                   28   6.2  
SB_19025| Best HMM Match : Keratin_B2 (HMM E-Value=1.3)                28   8.3  
SB_51040| Best HMM Match : Kinesin (HMM E-Value=5.89947e-43)           28   8.3  

>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +3

Query: 336  IPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICXNLKYTEVFTSGTQRLYTALRN 515
            +P  T    + N+  +  A Q  F+ +Y+N+ +   +C  L+Y     +G +RL   ++ 
Sbjct: 844  VPDPTGKSALENILKIWCARQPEFYGVYDNKVSTLALCNVLQY--FINTGDKRLQVVVKG 901

Query: 516  YKKHSRHHKPE 548
             + +     PE
Sbjct: 902  DRIYPNDEAPE 912


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 420  NNEEAVNVICXNLKYTEVFTSGT-QRLYTALRNYKKHSRHHKPEHVLFAC 566
            N +  VN  C   K  E +T     + ++ + +YK H R+H  + + F C
Sbjct: 895  NLDAHVNAGCPKKKPQETYTCEVCDKGFSRVSSYKTHFRYHSKDTLTFKC 944


>SB_45379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 471 VFTSGTQRLYTALRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPNAST 620
           +F  GT + +  L  YK+ +        L+ C    I  FR+++R + S+
Sbjct: 15  LFLPGTSKEFFTLEKYKQAALKDYKRITLYLCTVNDIEEFRKEERDSDSS 64


>SB_5553| Best HMM Match : Toxin_20 (HMM E-Value=4.6)
          Length = 299

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 471 VFTSGTQRLYTALRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPNAST 620
           +F  GT + +  L  YK+ +        L+ C    I  FR+++R + S+
Sbjct: 103 LFLPGTSKEFFTLEKYKQAALKDYKRITLYLCTVNDIEEFRKEERDSDSS 152


>SB_19025| Best HMM Match : Keratin_B2 (HMM E-Value=1.3)
          Length = 227

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 424 TKRRLTLYAXI*NIPKFSQAARNGYTQRYATTRSILDTTNPNTFCSRVSRDELR 585
           T+RR+  Y  +  IP+ S +A   Y Q  A      + + P  F + V  D LR
Sbjct: 164 TRRRINRYQRLRQIPESSPSATREYRQVLARRHGTFEFSEP-VFGNEVPPDALR 216


>SB_51040| Best HMM Match : Kinesin (HMM E-Value=5.89947e-43)
          Length = 197

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 246 AHF-DEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIY 419
           AHF    D+     +  +L GN +  +   + PSA NY+E  + L    +A++++ H + 
Sbjct: 131 AHFVPYRDSVLTWLLKDNLGGNSKTVMVATISPSADNYEETLSTLRYADRAKKIVNHAVV 190

Query: 420 NNE 428
           N +
Sbjct: 191 NED 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,633,222
Number of Sequences: 59808
Number of extensions: 424680
Number of successful extensions: 939
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)