Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120845.seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51440.1 68416.m05634 strictosidine synthase family protein s...    31   0.55 
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR...    31   0.96 
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    30   1.3  
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    30   1.7  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    30   1.7  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    29   2.9  
At3g13330.1 68416.m01678 expressed protein                             29   3.9  
At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    28   5.1  
At2g39180.1 68415.m04812 protein kinase family protein contains ...    27   8.9  

>At3g51440.1 68416.m05634 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088
          Length = 371

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 172 AYHDDGWFI---CNSHLIKRFKMSKMVLPILTKTTINSK*RSLGI*LEIKKEV 321
           AYH+D  FI   C    +KR K+++ V   L +  +N+  R LGI   I  EV
Sbjct: 74  AYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFGIHGEV 126


>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
            class), putative similar to zinc finger protein
            (GI:15811367) [Arabidopsis thaliana]; similar to
            TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
            to disease resistance protein RPP1-WsB (GI:3860165)
            [Arabidopsis thaliana]
          Length = 1996

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 363  VFNLNSMMQAEQLIFHLIYNN-EEAVNVICXNLKYTEVFTSGTQRLYTALRNYKKHSRHH 539
            VF      + + L F LIY+N + ++++IC +   TEV+ +G + L    RN  K ++  
Sbjct: 1033 VFRRYLRPEKDYLSFSLIYHNGDRSLDLICKDKAETEVWFAGLKSLIRQNRN--KQAKSE 1090

Query: 540  KPE 548
             PE
Sbjct: 1091 IPE 1093


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 387 QAEQLIFHLIYNNEE-AVNVICXNLKYTEVFTSGTQRLYTALRNYKKHS 530
           + + L F L+YNN E ++++IC +   TEV+ +  + L    RN +  S
Sbjct: 82  EKDHLSFSLLYNNRERSLDLICKDKAETEVWFAALKFLIEKSRNRRARS 130


>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 327 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 449
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 327 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 449
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 501 TALRNYKKHSRHHKPEHVLFACVARR 578
           T  +++K+H RHHK + +   CV +R
Sbjct: 337 TKQKSHKRHGRHHKSDCMCAICVLKR 362


>At3g13330.1 68416.m01678 expressed protein
          Length = 1711

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 323 DTSFFISN*M--PSDRHFELIVVFVKMGKTIFDILKRLMRWLLQINHPSS 180
           +T F  SN    PS    + IV F+K G +  + L++L+  L Q  HPS+
Sbjct: 199 NTRFLFSNRTTTPSKSIAQSIVYFLKPGSSAHEQLEKLVNLLEQYYHPSN 248


>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +3

Query: 471 VFTSGTQRLYTALRNYKKHSRHHKPEHVL 557
           +FT G +++YT++R  K   + ++P +++
Sbjct: 341 IFTCGVEQMYTSIRYLKDDLKRYQPNYIV 369


>At2g39180.1 68415.m04812 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 776

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 160 CSPXAYHDDGWFICNSHLIKRFKMSKM 240
           CSP     DGWF  N+ ++K  +++ +
Sbjct: 336 CSPRGNCGDGWFAFNASILKESELTSL 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,649,113
Number of Sequences: 28952
Number of extensions: 281535
Number of successful extensions: 642
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)