Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120843.seq
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2VQT0 Cluster: Heme-copper oxygen reductase; n=1; Rhod...    34   2.8  
UniRef50_Q8XYR0 Cluster: Probable bacteriophage protein; n=1; Ra...    33   4.9  
UniRef50_Q6MKN2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q2VQT0 Cluster: Heme-copper oxygen reductase; n=1;
           Rhodothermus marinus|Rep: Heme-copper oxygen reductase -
           Rhodothermus marinus (Rhodothermus obamensis)
          Length = 561

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 264 FKTGNVTKLLRKKTATKFVIHRTKWAHTHYALTAGGFWASIRPTASGWNLPYI 106
           F  G +T L+        V+H T W   H+ +T G   A      + W +PY+
Sbjct: 359 FVFGGITGLINASFTMNQVVHNTTWVPGHFHMTVGSAVAMTFMGVAYWMVPYL 411


>UniRef50_Q8XYR0 Cluster: Probable bacteriophage protein; n=1;
           Ralstonia solanacearum|Rep: Probable bacteriophage
           protein - Ralstonia solanacearum (Pseudomonas
           solanacearum)
          Length = 1051

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 486 ILRNVS*IGRFMRYVVITNVVESNIFNKAVIWAFXPGTFVPGYYNRACCIKRCRSKTGLT 665
           +L++++ + R M Y   +NVV       +  + F PG  V G +  A   +R R    L 
Sbjct: 348 VLQDLASVFRGMAYWASSNVVAVADMPASASYLFHPGNVVDGRFTYAGSARRARKTVALV 407

Query: 666 VWYNP 680
            W +P
Sbjct: 408 SWNDP 412


>UniRef50_Q6MKN2 Cluster: Putative uncharacterized protein; n=1;
           Bdellovibrio bacteriovorus|Rep: Putative uncharacterized
           protein - Bdellovibrio bacteriovorus
          Length = 352

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 155 FGLVFGRPPVGGISHTYFFLYGMRSEVVTQHS 60
           FGL F +P V  + + Y FLY +RS V   H+
Sbjct: 159 FGLNFSKPFVDKLQYLYSFLYNLRSLVAVDHN 190


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,247,999
Number of Sequences: 1657284
Number of extensions: 13942386
Number of successful extensions: 26475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26469
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)