Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120843.seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    29   0.63 
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    26   5.9  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.8  

>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -2

Query: 261 KTGNVTKLLRKKTATKFVIHRTKWAHTHYALTAGGFWASIRPTASG 124
           ++G   K+L    AT  V+    W H          W  IRPT  G
Sbjct: 215 QSGEERKILDTSFATIGVVSNIYWQHRQLGKAGRSRWLGIRPTVRG 260


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 575 DRLIKNIAFYDIGNNDIPHKTTNLTN 498
           DR+I+ ++  D+ N ++ HK  ++ N
Sbjct: 228 DRVIRTVSIQDLDNPEVEHKFQDVVN 253


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 263 KSVAGXNRKCGRLYSFSCFI 322
           K VA    +CG +Y FSC +
Sbjct: 221 KPVAARMSRCGHVYCFSCLL 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,103
Number of Sequences: 5004
Number of extensions: 59941
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)