Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120843.seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical...    29   3.1  

>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
           protein F28B4.3 protein.
          Length = 2229

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 593 RXECPYDRLIKNIAFYDIGNNDIPHKTTNLTNISEN 486
           R  C Y  +++      IGNNDI H    +  +S+N
Sbjct: 277 RFNCTYPYILERYTCRKIGNNDIGHNLLQVEGMSDN 312


>AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical
           protein Y39B6A.47 protein.
          Length = 887

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 317 NTKTNTSGRTCGXFPRLILKPEMLQNCCGKKPQQNL 210
           N  T    RTC  FP    KP +L      +P+ N+
Sbjct: 413 NLNTTAGARTCVIFPIFAPKPNLLPTALSVRPRTNI 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,242
Number of Sequences: 27780
Number of extensions: 339539
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)