Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120843.seq
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47920.1 68416.m05225 hypothetical protein similar to zinc fi...    32   0.31 
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c...    29   2.9  
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c...    29   2.9  
At4g13820.1 68417.m02141 disease resistance family protein / LRR...    28   6.7  
At3g22100.1 68416.m02788 basic helix-loop-helix (bHLH) family pr...    27   8.8  

>At3g47920.1 68416.m05225 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 300

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 437 RYPHLSSMAFKIRKENNRI*FRPR-PHYGETAAVINRVSL*NTKTNTSGRTCGXFPRLIL 261
           R   + S  F++    N   +RPR P+YG   AV +   L ++  + S  T   FP  +L
Sbjct: 129 RLRRICSSCFRVTHHRNYCPYRPRLPNYGRERAVFHDERLRSSMNSQSQMTESSFPAPVL 188

Query: 260 KP 255
            P
Sbjct: 189 PP 190


>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 427

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 531 VITNVVESNIFNKAVIWAFXPGTFVPGYYNRACCIKRCR 647
           ++ N    N FN+    AF PG  VPG Y     + +CR
Sbjct: 306 LVLNRTIDNFFNETEQLAFNPGLVVPGIYYSDDKLLQCR 344


>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 492

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 531 VITNVVESNIFNKAVIWAFXPGTFVPGYYNRACCIKRCR 647
           ++ N    N FN+    AF PG  VPG Y     + +CR
Sbjct: 306 LVLNRTIDNFFNETEQLAFNPGLVVPGIYYSDDKLLQCR 344


>At4g13820.1 68417.m02141 disease resistance family protein / LRR
           family protein contains leucine rich-repeat (LRR)
           domains Pfam:PF00560, INTERPRO:IPR001611; similar to
           disease resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 719

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -3

Query: 638 FNTTCPVIIXRNKGPRXECPYDRLIKNIAFYDIGNN----DIPHKTTNLTNI 495
           FNTT  V+  RN     E P + +  ++   D+G N    ++P    N T +
Sbjct: 515 FNTTLSVLHLRNNNLSGEFPEESISDHLRSLDVGRNRLSGELPKSLINCTRL 566


>At3g22100.1 68416.m02788 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 252

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 429 WIPIQIVYNTA*SVVLTDLI 488
           W+P++ VYNTA  V  TDL+
Sbjct: 188 WMPLESVYNTAGEVGETDLL 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,279
Number of Sequences: 28952
Number of extensions: 309997
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)