Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120839.seq
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 77 2e-15
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 73 3e-14
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 41 1e-04
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 33 0.030
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 29 0.48
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.84
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 28 1.5
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 27 1.9
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 26 4.5
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 5.9
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 25 7.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 7.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 7.9
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 7.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.9
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 25 7.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 7.9
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/70 (51%), Positives = 49/70 (70%)
Frame = +2
Query: 236 GHRCININRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDID 415
G C ++N DITE LL I+ NED +V GI+VQLP+P INE+ + +A+APEKD+D
Sbjct: 62 GISCEHVNFPEDITEYDLLLAIKGFNEDPTVHGIIVQLPLPAHINEQIITEAVAPEKDVD 121
Query: 416 GFHIINIGRL 445
GF N+G+L
Sbjct: 122 GFCETNLGKL 131
Score = 28.7 bits (61), Expect = 0.84
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 537 VVIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTICHRYT 656
VVIGRS VG P++++L +ATVT+CH T
Sbjct: 165 VVIGRSNIVGRPMSILLEK---------ANATVTLCHSKT 195
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Frame = +2
Query: 287 LLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDGFHIINIGRLCVD--LP 460
LL E++ LN+D++V G+LVQLP+P +NER V ++I P KD+DGF NIG L + P
Sbjct: 110 LLHELKKLNDDHTVHGVLVQLPLPKHLNERTVTESITPPKDVDGFGAFNIGLLAKNDATP 169
Query: 461 TIVPATALAVVEMLK 505
P T ++E+LK
Sbjct: 170 IHYPCTPKGIMELLK 184
Score = 39.5 bits (88), Expect = 5e-04
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 60 ARILDGKALAMEIKKELKQKIAQWVGLG-NRAPTIRCIIVGDDPASHTYVRNKVEAAKFV 236
A IL+GK LA ++++ + +++ N P + + VG S+ YVR K +AA+ V
Sbjct: 33 ANILNGKLLARKLQRSVAEEVQALKAKDRNFKPALAIVQVGKREDSNVYVRMKEKAARLV 92
Query: 237 GID 245
GID
Sbjct: 93 GID 95
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 537 VVIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTICHRYT 656
VV+GRS VG PI+ +L D +ATVT+CH T
Sbjct: 196 VVLGRSDIVGNPISYLLRKD---------NATVTVCHSKT 226
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/106 (24%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Frame = +2
Query: 269 DITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDGF---HIINIG 439
++ ++ L I N D SV+GI++ PV + ++ + ++P+KD++G +++N+
Sbjct: 75 EVPKDDLEDAIVEANNDPSVNGIMIYFPVFNDGQDQYLQQVVSPDKDVEGLCHKYVMNMY 134
Query: 440 RLCVDL------PTIVPATALAVVEMLKRLTSTHSVATXRDRSFQK 559
L +I+P T LA+V++L+ L + + +R + K
Sbjct: 135 HNIRHLDPEKTKKSILPCTPLAIVKILEYLGVYNKIINYGNRLYGK 180
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 33.5 bits (73), Expect = 0.030
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 278 EEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDG 418
EEQ+ ++ + +D+S++ +L+ L + D + R C IA E ++ G
Sbjct: 1438 EEQIDDDVSPVAQDSSLEELLISLDIIDLTSVMRSCQTIASEIELTG 1484
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/75 (22%), Positives = 40/75 (53%)
Frame = +3
Query: 30 NSKNNNFIIMARILDGKALAMEIKKELKQKIAQWVGLGNRAPTIRCIIVGDDPASHTYVR 209
+ KN NF+ +A + KAL +E +++L +K+ ++ L + P + ++V + +V
Sbjct: 597 HQKNPNFVKLADAMGIKALRVEKREDLAKKMKEF--LSTKGPVLMEVLVAQKEHVYPFVP 654
Query: 210 NKVEAAKFVGIDALT 254
+F+ ++L+
Sbjct: 655 GGKALHQFILHESLS 669
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.7 bits (61), Expect = 0.84
Identities = 22/82 (26%), Positives = 33/82 (40%)
Frame = +2
Query: 77 QSTCYGDKEGAEAKNSTVGGSWKPSSHHSLYNCWR*PSEPHLRQEQS*SRKICGHRCINI 256
QS A+ +V G +PSS SLY + S+P L ++S S G
Sbjct: 727 QSDVVSPAPSTRARGQSVSGQQRPSSSMSLYGEYN-KSQPQLSMQRSVSPNPLGPN---- 781
Query: 257 NRDSDITEEQLLSEIQNLNEDN 322
R S + + Q + N +N
Sbjct: 782 RRSSSVLQSQKSTSSNTSNRNN 803
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 248 ININRDSDITEEQLLSEIQNLNEDNS 325
+N+ RD+DI LS+ N+N DNS
Sbjct: 469 LNLPRDTDIKATPNLSQSGNINSDNS 494
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 317 DNSVDGILVQLPVPDTINE--RRVCDAIAPEKDIDGFHIINIGRLCVDLPTIV 469
DN +D +L + E RR C A+ K ID + G LC DL +++
Sbjct: 272 DNLIDDVLQSETSGNKRKELLRRSCLALTKNKRIDSYERALYGALCGDLNSVL 324
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 534 VATECVDVNLFS-ISTTANAVAGTMVGRSTHSLPMLIMWKPSISFSGAIASQTLLSLIVS 358
+A+ V+ N S IST+ + G VGR +WKP + + + L S IV+
Sbjct: 335 IASAFVEKNGGSLISTSDHETGGLTVGRQVSKKYPEYLWKPQVLSLALHSIEYLASAIVN 394
Query: 357 GTGNWTRIP 331
N T +P
Sbjct: 395 HNQN-TLLP 402
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -3
Query: 555 WNDLSRXVATECVDVNLFSISTTANAVAGTMVGRSTHSLPMLIMWKPSIS 406
W+ R A C+D+ +S A+AVA + I + PS S
Sbjct: 319 WDPAKRPTAEMCLDLEFCRVSAPADAVASKEEVNKNTDFRVSISYFPSSS 368
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 466 NGR*IHTQPSDVDYVETIDIFFRSNSIANSPLINCIRYR*LDENSINTIIFI 311
NG+ I T P+D+D +E +I + + P + + EN+ I FI
Sbjct: 359 NGKRIETFPADLDSLEEAEIVYETFPGWKVPTTGITHWDQMPENAKKYIEFI 410
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 242 RCININRDSDITE---EQLLSEIQNLNEDNSVDGILVQ 346
RC +NR+ DI + E+L ++N N D + + +L Q
Sbjct: 443 RCDQLNREIDILQNHVEKLKMSLKNTNSDITGEDVLQQ 480
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 454 IHTQPSDVDYVETIDIFFRSNSIANSP 374
IHTQ S++ Y+ ++D+ + +++ P
Sbjct: 2206 IHTQSSELPYLSSVDVTTHAKILSSHP 2232
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 251 NINRDSDITEEQLLSEIQNLNEDNSVDGIL 340
N + +S +TE L EI++ ++D DGI+
Sbjct: 176 NHDNESTLTEGIALKEIESPDKDRKADGIV 205
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 242 RCININRDSDITEEQLLSEIQNLNEDNS 325
RC NI +DS+ LL E ++LN + S
Sbjct: 1001 RCENITKDSETRVALLLEENKHLNNELS 1028
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/24 (37%), Positives = 20/24 (83%)
Frame = +2
Query: 281 EQLLSEIQNLNEDNSVDGILVQLP 352
+QL++++ +L ++ + DG+L+QLP
Sbjct: 49 QQLVNKMISLPKERTSDGVLLQLP 72
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 266 SDITEEQLLSEIQNLNEDNSVD 331
S +T E LLSE+++ N +NSV+
Sbjct: 747 SRLTSEALLSELKSRNGNNSVE 768
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,922
Number of Sequences: 5004
Number of extensions: 64438
Number of successful extensions: 206
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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