Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120839.seq
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 84 9e-17
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 81 8e-16
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 76 3e-14
01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339... 31 1.1
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964 29 3.5
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029 28 8.1
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 84.2 bits (199), Expect = 9e-17
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Frame = +2
Query: 224 RKIC---GHRCININRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAI 394
RK C G R ++++ DI+E L++E+ LN D +V GILVQLP+P INE ++ + I
Sbjct: 54 RKACAEVGIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEI 113
Query: 395 APEKDIDGFHIINIGRLCVD--LPTIVPATALAVVEMLKR 508
+ EKD+DGFH +NIG+L + P +P T +E+L R
Sbjct: 114 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCMELLTR 153
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +3
Query: 57 MARILDGKALAMEIKKELKQKIAQWVGLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFV 236
MA+I+DGKA+A +I++E+ +A N P + +IVG S TYV+ K +A V
Sbjct: 1 MAQIIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEV 60
Query: 237 GI 242
GI
Sbjct: 61 GI 62
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 537 VVIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTICHRYTPKRQT 671
VV+GRS VG+P++++L L DATV+I H TP ++
Sbjct: 164 VVVGRSNIVGLPVSLLL---------LKADATVSIVHSRTPNPES 199
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 81.0 bits (191), Expect = 8e-16
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Frame = +2
Query: 188 SEPHLRQEQS*SRKICGHRCININRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTI 367
S+ ++R ++ + G + +N D +E+++L I N D SV GILVQLP+P +
Sbjct: 124 SQTYVRNKKKACEAV-GIKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHM 182
Query: 368 NERRVCDAIAPEKDIDGFHIINIGRLCVD--LPTIVPATALAVVEMLKR 508
N+ + +A++ EKD+DGFH +NIGRL + P VP T +E+L R
Sbjct: 183 NDENILNAVSIEKDVDGFHPLNIGRLAMQGRDPFFVPCTPKGCMELLHR 231
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +3
Query: 60 ARILDGKALAMEIKKELKQKIAQWVGLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVG 239
A+I+DGK +A +I++E+ +IA+ P + I+VG S TYVRNK +A + VG
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVG 139
Query: 240 I 242
I
Sbjct: 140 I 140
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 522 IRSQR-VVIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTICHRYTPK 662
I+ +R VVIGRS VGMP A++L +ATV+I H T K
Sbjct: 236 IKGKRAVVIGRSNIVGMPAALLLQK---------ANATVSIVHSNTKK 274
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Frame = +2
Query: 275 TEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDGFHIINIGRLCV- 451
TE+ ++ + NED SV GILVQLP+P ++E R+ AI+ EKD+DGFH +N+G L +
Sbjct: 170 TEDVVVDSVSRFNEDPSVHGILVQLPLPQHMDEERILSAISLEKDVDGFHPLNVGNLALR 229
Query: 452 -DLPTIVPATALAVVEML 502
P VP A A +E+L
Sbjct: 230 SRKPLFVPCAAKACLELL 247
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/64 (32%), Positives = 39/64 (60%)
Frame = +3
Query: 60 ARILDGKALAMEIKKELKQKIAQWVGLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVG 239
A I+DGK++A +I+ ++ +++ Q P + ++VGD S +YVR K++ + VG
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVG 157
Query: 240 IDAL 251
I +L
Sbjct: 158 IKSL 161
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 540 VIGRSKNVGMPIAMMLHSDKRHESGLGMDATVTICHRYT 656
VIGRSK VG+P +++L +RH ATV+I H +T
Sbjct: 261 VIGRSKVVGLPTSLLL---QRHH------ATVSIIHAFT 290
>01_06_1692 -
39232475-39232867,39233176-39233310,39233770-39233916,
39234131-39234303,39235201-39235288,39235508-39235725,
39235968-39236025,39236259-39236315,39237022-39237099
Length = 448
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 424 HNQHRKAVCGSTYHCAGYSIGCSGNAEKINIDTFGRNXS 540
H +++ +CGST+HC +S + D+ N S
Sbjct: 44 HTSYKQGICGSTFHCRYFSSKAKKKTKSSGTDSGEENLS 82
>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
Length = 908
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 240 CPQILRLQLCS*RRCGSLGHRQQL--YSEWW-ELGFQDPPTVLFFAS 109
CP + R+ LCS CG L +Q+ S+WW +L ++D V S
Sbjct: 859 CPNLRRIPLCSTHNCGKL---KQICGSSDWWKKLLWEDKEAVAHMES 902
>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
Length = 677
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 531 ATECVD--VNLFSISTTANAVAGTMVGRSTHSLPMLIMWKPSISFSGAIASQTLLSLIVS 358
A C+D N S + A T VGR HS + + + GA S T + V+
Sbjct: 88 AATCIDGWQNFAGPSCSGIARCRTSVGRGVHSYTIQVTSLIDRNSMGASTSTTWAAAFVA 147
Query: 357 GTGNWTRIPSTLLSSFKFWI 298
G ++ + +L +F W+
Sbjct: 148 EQGWFSANENAMLYNFTNWL 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,960,557
Number of Sequences: 37544
Number of extensions: 423303
Number of successful extensions: 1045
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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