Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120839.seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)            62   5e-10
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)               28   8.3  

>SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)
          Length = 101

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
 Frame = +2

Query: 272 ITEEQLLSEIQNLNEDNSVDGILVQLPVPDTIN--ERRVC-DAIAPEKDIDGFHIINIGR 442
           + + Q+L  +  LN+D+++ GI+VQLP PD+ N  +  +C +A+ PEKD+DG H  N GR
Sbjct: 17  LCDMQVLKAVDELNKDSAIHGIIVQLP-PDSENPIDPGICTNAVIPEKDVDGLHDENAGR 75

Query: 443 LC-VDLPT-IVPATALAVVEMLKR 508
           L   +L T IVP T    +E++K+
Sbjct: 76  LARGELATCIVPCTPRGCLELIKK 99


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 69   LDGKALAMEIKKELKQKIAQWVGLGNRAPTIRCIIVGDDPA 191
            +DGK   +  + +L   I + +   N +P+  CI+ GD P+
Sbjct: 994  IDGKLFVVNEEDQLMASITKQIAASN-SPSYTCILTGDAPS 1033


>SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)
          Length = 593

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 429 IMWKPSISFSGAIASQTLLSLIVSGTGNWTRIPST 325
           +++K S+ FS A     +L +IVSG    T++PST
Sbjct: 128 VLFKNSLRFSIARLITVVLVVIVSGVWAGTKVPST 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,873,300
Number of Sequences: 59808
Number of extensions: 489478
Number of successful extensions: 1126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)