Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120839.seq
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.52 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.2  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   6.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.4  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 269 DITEEQLLSEIQNLNEDNSVDGI 337
           D+T + LL  I+NL + +++DG+
Sbjct: 137 DMTRQYLLQLIRNLRQSSALDGV 159


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 12  LSTWFENSKNNNFIIMARILDGKALAMEIKKELKQ 116
           LS W + +K++NFI +  + D      E+   +K+
Sbjct: 119 LSCWLQMTKHHNFIKVCSVNDVNMTITELTDPVKE 153


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 392 IAPEKDIDGFHIINIGRLCVDLPTIVPA 475
           +A EKDIDGF ++    L  D   IV A
Sbjct: 219 LAKEKDIDGF-LVGGASLKPDFVQIVNA 245


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 177 QQLYSEWWELGFQDPPTV 124
           QQ  S W  LGF   PT+
Sbjct: 334 QQWNSYWGILGFPSAPTI 351


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 177 QQLYSEWWELGFQDPPTV 124
           QQ  S W  LGF   PT+
Sbjct: 334 QQWNSYWGILGFPSAPTI 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,077
Number of Sequences: 438
Number of extensions: 4305
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)