Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120837.seq
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 31 0.11
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 29 0.46
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 29 0.61
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 29 0.61
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 3.2
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 26 4.3
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 7.5
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 7.5
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.9
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -3
Query: 484 PLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMS 305
P+ + L L+S A R T L + A G + + PR++L V EP+ + S
Sbjct: 384 PMQKLQQQLQRLVSS-AKERPKATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPASSNS 442
Query: 304 SID--SGFSAIYIWLNLLSRV 248
S++ SGFS L+ + +V
Sbjct: 443 SLNNFSGFSTKKDVLHAIEKV 463
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 29.5 bits (63), Expect = 0.46
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Frame = -3
Query: 517 AIVSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAF-----GDLTP*SYTVPR 353
AIV ++ + + + N+ SL K R++ ++ +L+++ LTP +P+
Sbjct: 625 AIVEPIVAVLAKIASTNIAAGSL--KDTSVRLVEGVVKILSSYRKVAANRLTPGQLVLPK 682
Query: 352 KMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSRVRCA 239
++L+P L+ L S+I SG I ++ L VR A
Sbjct: 683 NLVLLPILILAVLKSSAIRSGSIHSDIRVSQLREVRAA 720
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 29.1 bits (62), Expect = 0.61
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 443 KVCG--AARHGHITRCAGRVWRFNSIVVYGAQKNAVSAHF 330
K+CG A HGH R R+W F + Y +K ++ F
Sbjct: 39 KICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVF 78
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 29.1 bits (62), Expect = 0.61
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 593 PLVRTAAPCWGRSSTQSCCRLRIATCHCLYSFSGRYTF 480
PL T + WG S C ++ CL+SF G+ F
Sbjct: 399 PLNETCSEWWGELLA-STCNTKLDNLSCLHSFDGKQNF 435
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 599 RAPLVRTAAPCWGRSSTQSCCRLR 528
+AP V + + C S ++SCC LR
Sbjct: 1787 KAPFVNSTSICTAVSESRSCCHLR 1810
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 303 DDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTR 428
D I + G NK S+ + T+ + SPN+ +T+SN T+
Sbjct: 891 DSIKRLGDNKFEDKSLRICTIPNSIFDSPNSHTTNSNSFFTK 932
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 306 DIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFK 461
D +KE + K +S+F ++Y PNA+ N T ++D++E +
Sbjct: 64 DSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTT---EPSYDLQELR 112
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 430 PRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTL 329
P V++ V AF +TP YTVP+ +++PTL
Sbjct: 384 PPVLMVPYRVKKAF-PITP-DYTVPKDAMVIPTL 415
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 225 PGGQFAHRTRDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST 404
P G + KL + E PLS +D++ GSN T+ +F ++ G +S +
Sbjct: 500 PNGDLYNFNGSMKLDSIQ-GEIPLSNNDVLYRGSNLRNTSELFALVIFT-GEESKIRMNA 557
Query: 405 SSNVTM 422
NV++
Sbjct: 558 VRNVSV 563
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 279 IAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTS 407
I +PL + + K + + S +LGT S N+ +TS
Sbjct: 396 IFNQPLRSESLEKSSKSPISAQSSYLGTPLKNDENSSNSGATS 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,731
Number of Sequences: 5004
Number of extensions: 56517
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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