Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120837.seq
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               33   0.16 
SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)       32   0.37 
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +3

Query: 231  GQFAHRTRDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSS 410
            G   H   + +L + +I  K L+++ I K+  N  GT+ +   T  DYG  S N      
Sbjct: 1367 GNKYHSISERRLGKPHIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHG 1424

Query: 411  NVTMTRGTANFDIKE 455
            N    R T    ++E
Sbjct: 1425 NRIQERSTKRAALEE 1439


>SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)
          Length = 340

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -2

Query: 503 SFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRFNSIVVYGAQKNAVSAHFVG 324
           S+  R +FE NK+   ++  K C     G+I    G     + +VV G+  NA+    V 
Sbjct: 206 SYKFRLSFE-NKNCVDYITEKYCYPLEKGNIPIVLGGASYDSKLVVPGSYINALDFPSVK 264

Query: 323 ALFDYVVY 300
           AL DY+ Y
Sbjct: 265 ALADYIQY 272


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 193 SRLIPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 74
           S ++PP R  S+  W  PR RNL +   S R K  R +R++
Sbjct: 156 SVVLPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -2

Query: 665  NKTC*A-ALVFSCTPECSWICAIRAPLVRTAAPCWGRSSTQSCCRLRIATC 516
            +KTC +   V SC P+C   C    PL    A C   S    C  +  + C
Sbjct: 1640 SKTCPSWCSVSSCKPDCPARCCTTEPLSACPATCSPDSCRPECPLICCSVC 1690


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,193,342
Number of Sequences: 59808
Number of extensions: 444017
Number of successful extensions: 1231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)