Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120837.seq
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009764-1|AAH09764.1|  212|Homo sapiens mitochondrial ribosomal...    31   2.8  
AF151876-1|AAD34113.1|  212|Homo sapiens CGI-118 protein protein.      31   2.8  

>BC009764-1|AAH09764.1|  212|Homo sapiens mitochondrial ribosomal
           protein L48 protein.
          Length = 212

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +3

Query: 315 KEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANF--DIKEFKSMFIVFKGI 488
           K+   KV   +I LGT Y+YGV   N   T+ ++T+    A +  ++    S+ +     
Sbjct: 69  KKKKGKVEVRAINLGTDYEYGVL--NIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYA 126

Query: 489 TPTKTVETMACCDSKS 536
            PTKT+E +   D  S
Sbjct: 127 MPTKTIEVLQLQDQGS 142


>AF151876-1|AAD34113.1|  212|Homo sapiens CGI-118 protein protein.
          Length = 212

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +3

Query: 315 KEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANF--DIKEFKSMFIVFKGI 488
           K+   KV   +I LGT Y+YGV   N   T+ ++T+    A +  ++    S+ +     
Sbjct: 69  KKKKGKVEVRAINLGTDYEYGVL--NIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYA 126

Query: 489 TPTKTVETMACCDSKS 536
            PTKT+E +   D  S
Sbjct: 127 MPTKTIEVLQLQDQGS 142


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,795,484
Number of Sequences: 237096
Number of extensions: 2029910
Number of successful extensions: 12215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12206
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)