Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120836.seq
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.1  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    26   3.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.5  
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.5  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 25/90 (27%), Positives = 43/90 (47%)
 Frame = +2

Query: 2   GTRTSPGRKQLHKRAKPVSVSANNHTPVLGLHDRARSRSKAKQ*ASPARISFSCSWPSSP 181
           GTRTS         + P S S+++ +       ++ S SK+   +S +  S S S  SS 
Sbjct: 138 GTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSK 197

Query: 182 RILTIVSSSNNWQLANPSRHRLQSRVWSTA 271
              +  SSS++   A+PS  +  S+  S++
Sbjct: 198 SSSS--SSSSSKSSASPSSSKSSSKFSSSS 225


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 255 RDCNLCREGLANCQLFDEDTIVKMR 181
           R C + RE LANC L  +   VK +
Sbjct: 3   RSCKVIREDLANCLLHSDCMFVKKK 27


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = -1

Query: 216  QLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNPNT 82
            Q FD+   + ++ D+ ++ + L  A +    ++DR+ + + NP++
Sbjct: 4305 QAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDS 4349


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/45 (20%), Positives = 22/45 (48%)
 Frame = +1

Query: 379 SSWCTSIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTNI 513
           ++WC  I+      I  I +  + ++ + +LL+  CP + +   +
Sbjct: 852 NAWCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAPCPIVALSATV 896


>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 168 QEQEKLIRAGEAYCLALDRERARSCNPNT 82
           +E+E+L++  E    ALD+ER  S  P T
Sbjct: 81  KEKEQLLKEKELRQKALDKERMVSSKPET 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,764
Number of Sequences: 5004
Number of extensions: 48942
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)