Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120836.seq
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987...    33   0.23 
03_05_0200 - 21911260-21911322,21911655-21911705,21911756-219118...    28   5.0  
01_06_1037 + 33990358-33991263                                         28   6.6  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    27   8.7  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    27   8.7  

>09_04_0260 -
           16197522-16197669,16198027-16198130,16198508-16198719,
           16198795-16198900,16199006-16199119,16199200-16199417,
           16199837-16199900,16199982-16200335,16200609-16200767,
           16201486-16202907
          Length = 966

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = -1

Query: 378 GALSYCGF*QHGRAAH*TAVRNNNRRQYTRMSQNFDAVLHTRDCNLCREGLANCQLFDED 199
           G  S C F  H R  H + V +    +   ++  +D  L  RDC   +EG   C L  E+
Sbjct: 288 GGASVCTFALHNRNCHSSCVES----ELEMLNAKYD--LGPRDCKESQEGPGLCSLISEE 341

Query: 198 TIVKMRGD 175
             V   GD
Sbjct: 342 RTVAAEGD 349


>03_05_0200 -
           21911260-21911322,21911655-21911705,21911756-21911851,
           21911947-21912045,21913213-21913526,21913621-21913696,
           21913788-21915136,21915344-21915944
          Length = 882

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 195 LYLRQTTGSWLILRGTDCNRVC 260
           L + +TT  WL +   DCNR C
Sbjct: 789 LEVERTTRKWLTIMNKDCNRFC 810


>01_06_1037 + 33990358-33991263
          Length = 301

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 89  PTRVCGCWPKLKLVSLFCAVAYGP 18
           P R+ G WP L  +  FC  A GP
Sbjct: 117 PGRIVGGWPALAKMLFFCCGAAGP 140


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -2

Query: 191 SRCVAMTAKNRRSLFEREKPTAWLWIENAPDRVTPTRVCGCWPKLKLVSLFCAVAYG 21
           +RC AM  K  R++   E+    +   N  D++      GC  K +++S+      G
Sbjct: 635 TRCTAMVPKRSRTVVAAEEAQLMIGRRNEKDKLIKMLDSGCDAKHRVISVISVWGMG 691


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = -1

Query: 303 RQYTRMSQNFDAVLHTRDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCL 124
           R Y  +  +++A LH  D  +  E  A  ++F  DT+ K R +       ++  G    L
Sbjct: 336 RSYEYIEGDYEADLHDADPAISVENTAEIKIFVVDTVEKKRVEIENLDGHVLFLGHNQSL 395

Query: 123 ALDRER 106
            L  E+
Sbjct: 396 CLSTEQ 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,507,750
Number of Sequences: 37544
Number of extensions: 317225
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)