Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120836.seq
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.9  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 143  ARISFSCSWPSSPRILTIVSSSNNWQLANPSRHRLQSRVWS 265
            A I    + P++PR++ +  S   W+ + PSR  L S ++S
Sbjct: 2467 ADIKLEATPPATPRLIRVQESPRPWKRSAPSRQVLSSPLFS 2507


>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 267 RRQSFVTFVCIAFDYYFGRRFNERHARVVKNRNRITH-LFMVHIYQVYIRVHYCNNH*KK 443
           RR +F+T  C+ + YY  R     H  +  +  R  H L   H  +    +HY +     
Sbjct: 54  RRATFITIFCVHYTYYTTRTL---HVLLYTHTKRALHVLHYTHTKRALNVLHYTHAKRTL 110

Query: 444 QQYNSKMHFTYWRMSEYFCTYEY 512
            +    +H+T+ + + +   Y +
Sbjct: 111 HRALHVLHYTHTKRALHVLHYTH 133


>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +3

Query: 303 FDYYFGRRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQYNSKMH 467
           +D +       +H RV + +++   H++     +HIY  +IRVH  + H +   YN+   
Sbjct: 82  YDKHIRVHIYNKHIRVHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYDKHIRVHIYNNTYV 141

Query: 468 FT 473
           +T
Sbjct: 142 YT 143



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +3

Query: 303 FDYYFGRRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQYN 455
           +D +      ++H RV + +++   H++     VHIY  +IR+H  + H +   YN
Sbjct: 37  YDKHMRVHIYDKHMRVHIYDKHIRIHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYN 92



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +3

Query: 303 FDYYFGRRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQYN 455
           +D +      ++H R+ + +++   H++     +HIY  +IRVH  N H +   Y+
Sbjct: 46  YDKHMRVHIYDKHIRIHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYNKHIRVHIYD 101


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +2

Query: 14  SPGRKQLHKRAKPVSVSANNHTPVLGLHDRARSRSKAKQ*ASPARISFSCSWPSSPRILT 193
           SP    L      ++ ++   TP      R+RSRS+A+  ++P+    + S PS+P  +T
Sbjct: 181 SPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPS----TPSTPSTPSTIT 236

Query: 194 IVSSSNN 214
             S +++
Sbjct: 237 TSSRASS 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,955,600
Number of Sequences: 59808
Number of extensions: 413418
Number of successful extensions: 1077
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)