Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120836.seq
         (600 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF311904-1|AAM94900.1|  683|Homo sapiens membrane protein SB87 p...    30   7.1  
AF258571-1|AAG23774.1|  328|Homo sapiens PP3999 protein.               30   7.1  

>AF311904-1|AAM94900.1|  683|Homo sapiens membrane protein SB87
           precursor protein.
          Length = 683

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 140 PARISFSCSWPSSPRILTIV-SSSNNWQLANPSRHRLQSRVWSTAS 274
           P  +  +  W +S  I+TI  S S +W  A+  RH+ +SR  STAS
Sbjct: 502 PGAVITTSFWHNSSTIMTIQRSKSKDWAPAS-DRHQTRSRASSTAS 546


>AF258571-1|AAG23774.1|  328|Homo sapiens PP3999 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 140 PARISFSCSWPSSPRILTIV-SSSNNWQLANPSRHRLQSRVWSTAS 274
           P  +  +  W +S  I+TI  S S +W  A+  RH+ +SR  STAS
Sbjct: 147 PGAVITTSFWHNSSTIMTIQRSKSKDWAPAS-DRHQTRSRASSTAS 191


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,758,683
Number of Sequences: 237096
Number of extensions: 1688519
Number of successful extensions: 3578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3578
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)