Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120836.seq
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    30   1.1  
AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 174 DGQEQ-EKLIRAGEAYCLA-LDRERARSCNPNTGVWLLAETETGFALLCSC 28
           +G+E  E+ + AG+ YC   +D  R   C    G W L ET     + C+C
Sbjct: 439 EGEEDAERGLVAGKCYCKTNVDGNRCDRCK--NGYWNLTETNVDGCVACTC 487


>AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical
           protein C09D4.4b protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +2

Query: 5   TRTSPGRKQLHKRAKPVSVSANNHTPVLGLHDRARS-----RSKAKQ*ASPARISFSCSW 169
           TR S G   L+   + V++  +   PV+  H++ +S     R++ ++   P R S  CS 
Sbjct: 367 TRNSVGLLDLNNANRQVTIPNSASMPVVKAHEKHKSFREKLRNETRKLIHPRRKSLDCSQ 426

Query: 170 PSSPRIL 190
             S ++L
Sbjct: 427 SLSRKLL 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,487
Number of Sequences: 27780
Number of extensions: 288359
Number of successful extensions: 708
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)