Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120836.seq
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   9.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 461 NAFYLLENVRVFLYVRIFCCIRN 529
           ++FY+   + VFLY  IF  +RN
Sbjct: 350 SSFYIPCIIMVFLYYNIFKALRN 372


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 118 QSQAVGFSRSNKLLLFLAVIATHLDYCIFVK 210
           Q +AV     ++  L   V+  HLD C F +
Sbjct: 164 QEKAVAAELEDEQRLLATVVQAHLDTCDFTR 194


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 464 AFYLLENVRVFLYVRIFCCIRNI 532
           +FY+   V + +Y +IFC  R I
Sbjct: 210 SFYIPLFVMIQVYYKIFCAARRI 232


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 167  KNRRSLFEREKPTAWLWIENAPDRVTPTRVCG 72
            + +RSLF+   P   L +++AP    P   CG
Sbjct: 1248 ERQRSLFKDSSPATALMLQHAP----PAYSCG 1275


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 171 RHRHAS*LLYLRQTTGSWLILRGTDCNRVCGARRQS 278
           RH+HA+ ++Y  Q +   L +  +  +   G ++QS
Sbjct: 795 RHQHAAQMIYGHQQSHHGLHINSSPSSVQSGQQQQS 830


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 92  LHDRARSRSKAKQ*ASPARISFSCSWPSSP 181
           +H R RS  K+K  A+ A    S S  SSP
Sbjct: 365 MHGRGRSGKKSKFNAAVAAAVQSSSIVSSP 394


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 290 ECHKTLTPCSTH 255
           EC KT  PC  H
Sbjct: 99  ECSKTSNPCLPH 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,853
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)