Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120836.seq
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    27   7.2  
At5g02910.1 68418.m00234 F-box family protein similar to ribosom...    27   7.2  
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    27   7.2  
At2g26160.1 68415.m03139 F-box family protein contains F-box dom...    27   7.2  
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ...    27   7.2  

>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 VCGARRQSFVTFVCIAFDYYFGRRFNERHARVVKNRNRITH-LFMVH 392
           VCG + Q F  +VC+  D+   R+  +R  RV+ N NR  H +++ H
Sbjct: 254 VCGKKCQ-FTAYVCLQCDFVTARKCIDR-PRVI-NINRHDHRIYLTH 297


>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
           RNA apurinic site specific lyase [Triticum aestivum]
           GI:6505722; contains F-box domain Pfam:PF00646
          Length = 458

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -1

Query: 228 LANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDR-ERARSCNPNTGVWLLAETET 52
           L+NC L DE  +  + G    E  +L+   E  CL L + +  R    +   W +  T+ 
Sbjct: 160 LSNCTLSDESFLKILSGSPLLESLELLYCAEYMCLDLSQSQHLRRLEIDRSDWFMGPTKI 219

Query: 51  GFALLCSCLR 22
             A    CLR
Sbjct: 220 -VAPHLHCLR 228


>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 246 CNRVCGARRQSFVTFVCIAFDY 311
           CN VCG  ++S +T+VC+  D+
Sbjct: 221 CN-VCGLIKESILTYVCVPCDF 241


>At2g26160.1 68415.m03139 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 359

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +2

Query: 53  VSVSANNHTPVLGLHDRARSRSKAKQ*ASPARISFSCSWPSSPRIL-TIVSSSNNWQLAN 229
           ++++AN  + +  +  R RS  K  + A+    SF C+ PSS +++ T++S +  +++  
Sbjct: 14  INLTANRFSSISDVL-RVRSICKPWRSAAATPKSFQCNLPSSNKMIETVLSPTTFFRVTG 72

Query: 230 PS 235
           PS
Sbjct: 73  PS 74


>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 246 CNRVCGARRQSFVTFVCIAFDY 311
           CN VCG  ++S +T+VC+  D+
Sbjct: 143 CN-VCGLIKESILTYVCVPCDF 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,584,730
Number of Sequences: 28952
Number of extensions: 254974
Number of successful extensions: 710
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)