Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120835.seq
         (416 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.4  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   8.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   8.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = -2

Query: 190 SMNGSWIFCMCEVYPGGXCNPSFCVCV*YRLKN 92
           S  GSW      +YP          C    LKN
Sbjct: 230 SQYGSWFLPHQPIYPAVTATVQLSTCTRTTLKN 262


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 46  DGDDKPCLNCVISRA 2
           DGD K C N  + RA
Sbjct: 171 DGDWKKCFNIRLKRA 185


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 260 PSYCRMCGMS 231
           P+ CR+CG S
Sbjct: 249 PNVCRICGKS 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,769
Number of Sequences: 336
Number of extensions: 1572
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)