Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120835.seq
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0083 - 604175-605776 28 3.5
08_01_0082 - 588269-588434,590800-591653 28 3.5
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 28 3.5
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591... 27 4.6
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803... 27 4.6
01_07_0315 - 42692539-42693260,42693357-42693609 27 4.6
01_07_0317 + 42699035-42699305,42699411-42700132 27 6.0
01_06_1353 + 36533795-36533827,36533904-36533993,36535595-365356... 27 6.0
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 27 6.0
08_02_0932 - 22710818-22711033,22711375-22711581,22712282-22712545 27 8.0
01_07_0318 + 42703176-42703473,42703563-42704290 27 8.0
>08_01_0083 - 604175-605776
Length = 533
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 81 TPAPFFSRYHTQTQKLGLQXPPG*TSHI-QKIQEP 182
TPAP F R+ +T + + P G HI ++++ P
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERP 252
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 81 TPAPFFSRYHTQTQKLGLQXPPG*TSHI-QKIQEP 182
TPAP F R+ +T + + P G HI ++++ P
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERP 255
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 100 LKNGAGVSNHMWHRLKNDDGDDKPCLN 20
L G G +NH H +DD DD P L+
Sbjct: 56 LMRGGGAANHHHHDDDDDDDDDVPWLH 82
>04_04_0532 +
26058100-26058229,26058355-26058559,26058678-26059157,
26059262-26059354,26059526-26059636,26059720-26059792,
26060072-26060208,26061040-26061097
Length = 428
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 101 PVSHADAEARVTXAARVDLAHTEDPGAVH*QAAE 202
P + A R T A+VD A EDPG + A E
Sbjct: 87 PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120
>02_05_0970 -
33179180-33179210,33179297-33179441,33180307-33180362,
33180650-33180691,33180814-33180866,33181059-33181490,
33181630-33181707,33181785-33181870,33183588-33183689,
33183754-33183960,33184976-33185336,33185463-33185626,
33185709-33185817,33186468-33186485
Length = 627
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 9 EITQFKHGLSSPSSFFNRCHI-WFDTPAPFFSRYHTQTQKLGLQXPPG*TSHIQKIQEP 182
++T L+SP + + W + PA +HT Q PP H QK Q P
Sbjct: 471 DLTTLGLNLNSPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTP 529
>01_07_0315 - 42692539-42693260,42693357-42693609
Length = 324
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -2
Query: 181 GSWIFCMCEVYPGGXC-NPSF 122
G FCMC+ YPG C +P F
Sbjct: 79 GCKTFCMCDFYPGVSCGDPRF 99
>01_07_0317 + 42699035-42699305,42699411-42700132
Length = 330
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -2
Query: 169 FCMCEVYPGGXC-NPSF 122
FCMC+ YPG C +P F
Sbjct: 89 FCMCDFYPGVSCGDPRF 105
>01_06_1353 +
36533795-36533827,36533904-36533993,36535595-36535681,
36535775-36535843,36536472-36536552,36536641-36536712,
36536814-36536874,36536960-36537062,36537223-36537318,
36537394-36537440,36538052-36538299
Length = 328
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 311 FCNSRKPNEGRRRNRFVPSYCRMCGMSG 228
F +++ P E RR R + C M G SG
Sbjct: 240 FIDNKLPGESARRQRMLGFLCMMTGFSG 267
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 33 LSSPSSFFNRCHIWFDTPAPFFSRYHTQT 119
LSSPS +R FDT PF R HTQ+
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQS 652
>08_02_0932 - 22710818-22711033,22711375-22711581,22712282-22712545
Length = 228
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 288 RGQATKSLRSFVLSDVWNVW 229
RG K LRS +L VW +W
Sbjct: 179 RGVPKKGLRSLILLVVWKIW 198
>01_07_0318 + 42703176-42703473,42703563-42704290
Length = 341
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -2
Query: 169 FCMCEVYPGGXC-NPSF 122
FCMC+++PG C +P F
Sbjct: 98 FCMCDLFPGTSCGDPRF 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,558,276
Number of Sequences: 37544
Number of extensions: 169898
Number of successful extensions: 434
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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