Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120835.seq
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         31   0.50 
SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.7  
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)               27   6.2  
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         27   8.2  

>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 295 SQTRAGDEIASFL-RTVGCVECLAVNSSVXC-NF 200
           S+  AG    SFL +T  CV+C+ VNS+  C NF
Sbjct: 599 SELHAGSTKVSFLLKTSSCVKCVGVNSTFHCVNF 632


>SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -2

Query: 361 NKLFELSGLSLKSCRHDFVTVESQTRAGD--EIASFLRTVGC-VECLAVNSSVXCNFGGL 191
           N +F+LS  S      +F+ + +    G   E+ +   +  C  +C  VNS V  NFG  
Sbjct: 114 NHIFDLSSASFTY--FNFMDIPAHALVGYVVEVFNTSDSFSCQAKCFDVNSCVSVNFGRR 171

Query: 190 SMNGSWIFC 164
           S N S   C
Sbjct: 172 SANDSQFTC 180


>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 300 SKAKRGQATKSLRSFVLSDVWNVWLLIVAXSV 205
           SK K GQA+  L+  V+SDV   +L I A  V
Sbjct: 509 SKGKLGQASHLLKQMVVSDVMEEFLTIPAYEV 540


>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 329 KILQTRFCNSRKPNEGRRRNRFVPSYCRMCGMSGC 225
           K ++ R C+  KP  G +  +   +  RMC M  C
Sbjct: 287 KQMRKRVCDDPKPRNGGKTCKGADTQVRMCNMQPC 321


>SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)
          Length = 351

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 397 NDKVIYLQNSNKNKLF-EL-SGLSLKSCRHDFVTVESQTRA-GDEIASFLRTVGCVECLA 227
           ND +  +++ + + +F E+ S  + K CR    +V S+ +  G     F++   CV+CL 
Sbjct: 263 NDDIQIVEDCDDSNVFLEMESKKARKQCRCGLSSVGSRQKCVGKRCPCFMQEESCVDCLC 322

Query: 226 VN 221
            N
Sbjct: 323 CN 324


>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 320 QTRFCNSRKPNEGRRRNRFVPSYCR 246
           QTRF  S+ P    R    +P+YCR
Sbjct: 724 QTRFNTSQNPLRQTRSEEHLPTYCR 748


>SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 274 EIASFLRTVGC-VECLAVNSSVXCNFGGLSMNGSWIFC 164
           E+ +    V C ++CL V+S +  NFG  S+N S   C
Sbjct: 44  EVFNTSNLVNCHMKCLDVSSCLSLNFGRRSVNDSQFTC 81


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 103 RLKNGAGVSNHMWHRLKNDDGDD 35
           +LK+GA  ++H WH  +   GDD
Sbjct: 377 KLKDGAKTTDHNWHVHEKPVGDD 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,214,328
Number of Sequences: 59808
Number of extensions: 201509
Number of successful extensions: 464
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)