Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120833.seq
         (622 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2V0F1 Cluster: Zic related zinc finger protein Mt-zicL...    45   0.001
UniRef50_UPI0000DA1E3C Cluster: PREDICTED: hypothetical protein;...    38   0.19 
UniRef50_Q8I6I9 Cluster: Zic family transcription factor; n=1; H...    36   1.0  
UniRef50_UPI00015553F0 Cluster: PREDICTED: hypothetical protein,...    35   1.4  
UniRef50_UPI000065F7F9 Cluster: Putative homeodomain transcripti...    35   1.4  
UniRef50_UPI0000EBDA4D Cluster: PREDICTED: hypothetical protein;...    33   4.2  
UniRef50_O18283 Cluster: Putative uncharacterized protein; n=2; ...    33   5.5  
UniRef50_Q10DX8 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  
UniRef50_Q0IG46 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  
UniRef50_Q1L912 Cluster: Novel protein; n=2; Danio rerio|Rep: No...    32   9.6  
UniRef50_Q82NG8 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  
UniRef50_Q1MQL1 Cluster: Putative uncharacterized protein LI0662...    32   9.6  

>UniRef50_Q2V0F1 Cluster: Zic related zinc finger protein Mt-zicL;
           n=1; Molgula tectiformis|Rep: Zic related zinc finger
           protein Mt-zicL - Molgula tectiformis
          Length = 378

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = +3

Query: 204 SSTKRKKCLSTHSTAAAYVAPLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRVSPRRAQG 383
           +S+ RKK   TH T   Y+ P+  CG T + P        +    G +S TR +   + G
Sbjct: 222 NSSDRKKHTYTHRTQKPYICPVKGCGKTYIHPSSMRKHVKSHEEFGRTSMTRTNSMSSSG 281

Query: 384 SSAQSKRNS 410
           SS++S +NS
Sbjct: 282 SSSESPQNS 290


>UniRef50_UPI0000DA1E3C Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 171

 Score = 37.9 bits (84), Expect = 0.19
 Identities = 20/55 (36%), Positives = 34/55 (61%)
 Frame = +3

Query: 261 APLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRVSPRRAQGSSAQSKRNSATLHP 425
           +P  S G   +RPGL  ++++AG  PG+++ T +SPR +  +S     +SA +HP
Sbjct: 90  SPAHSTGDPGVRPGL--LQTLAG--PGKAAPTHLSPRSSPAASRSRSSHSARVHP 140


>UniRef50_Q8I6I9 Cluster: Zic family transcription factor; n=1;
           Halocynthia roretzi|Rep: Zic family transcription factor
           - Halocynthia roretzi (Sea squirt)
          Length = 468

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
 Frame = +3

Query: 204 SSTKRKKCLSTHSTAAAYVAPLVSC-----GPTSLRPGLQ--SIRSVAGRXPGESSGTRV 362
           +S+ RKK   THST+  Y   +  C      P+SLR  L+      +     G SS +R+
Sbjct: 231 NSSDRKKHTYTHSTSKPYACKVQGCKKSYTHPSSLRKHLKMHEAEGIKVESDGGSSDSRM 290

Query: 363 -SPRRAQGSSAQSKRNSATLHPRPTE 437
            SP  + GSS+ +   S      PT+
Sbjct: 291 TSPTSSNGSSSSNNAESGVSPKSPTD 316


>UniRef50_UPI00015553F0 Cluster: PREDICTED: hypothetical protein,
           partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           hypothetical protein, partial - Ornithorhynchus anatinus
          Length = 905

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 195 NIVSSTKRKKCLSTHSTAAAYVAPL-VSCGPTSLRPGLQSIRSVAGRXPGESSGTRVSP 368
           N+ +   ++KC +T S AA   +P   S   ++ +PG  S  +VAGR  GE S   V P
Sbjct: 43  NVSTLCGQEKCPNTFSCAALSASPTCASTAGSAPKPGPTSSATVAGRAMGEPSAITVGP 101


>UniRef50_UPI000065F7F9 Cluster: Putative homeodomain transcription
           factor 1.; n=1; Takifugu rubripes|Rep: Putative
           homeodomain transcription factor 1. - Takifugu rubripes
          Length = 703

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = +3

Query: 204 SSTKRKKCLSTHSTAAAYVAPLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRVSPRRAQG 383
           S  +RK+C S  ST   +V P VSC P   R       S  GR P +S G + +   +  
Sbjct: 151 SPARRKRCFSNCSTFPTHVLP-VSCCPACGRDNNDQYSS--GRRPRKSRGLKKTEENSSR 207

Query: 384 SSAQSKRNSATLH 422
           +    ++ S  LH
Sbjct: 208 NRNPEQKGSRQLH 220


>UniRef50_UPI0000EBDA4D Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 292

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 225 CLSTHSTAAAYVAPLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRVSPRRAQGSSAQ 395
           CL T   A++     +  GP    PG +S R+   R PG+ SG+ ++P R  G  A+
Sbjct: 90  CLQTQPPASSPATRGLLPGPPEFHPGPRSTRAARRRVPGD-SGSDLAPSRDLGPRAR 145


>UniRef50_O18283 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 263

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 189 LINIVSSTKRKKCLSTHSTAAAYVA--PLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRV 362
           L+ +  +   + CLS+    ++Y A  P VSC P+S +PG    +    R    S+ T+ 
Sbjct: 9   LVLVAGAVVTEACLSSGVCGSSYCAAPPAVSCSPSSCQPGYSCGQYGCARNRARSAVTQK 68

Query: 363 SPRRAQGSSAQSKRNS 410
                   S  SK NS
Sbjct: 69  VEGIFIDDSGNSKENS 84


>UniRef50_Q10DX8 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 257

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 280 DRRACDQGSKVYEALQGEXPANPPVHASVHAALRAPAPNL 399
           D +A   G+   + L    PA+PP H ++  ALR PAP L
Sbjct: 154 DAKAVAAGATTVDVLSLLSPASPPNHLALLPALRDPAPGL 193


>UniRef50_Q0IG46 Cluster: Putative uncharacterized protein; n=1; Aedes
            aegypti|Rep: Putative uncharacterized protein - Aedes
            aegypti (Yellowfever mosquito)
          Length = 1000

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 258  VAPLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRVSPRRAQGSSAQSKRNSATLHPRP 431
            V PL S    S+ PG  S+R         S+    +P R+Q    QS  + +T H +P
Sbjct: 941  VFPLESTAVRSVAPGSASVRQTDSDSEPSSNSASQTPTRSQYDVDQSSNSPSTTHSQP 998


>UniRef50_Q1L912 Cluster: Novel protein; n=2; Danio rerio|Rep: Novel
           protein - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 419

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +3

Query: 258 VAPLVSCG-PTSLRPG--LQSIRSVAGRXPGESSGTRVSPRRAQGSSAQSKRNSATLHPR 428
           ++P  S G P+S  P   L SIRS +G      +   ++PRR+ GSS+     +AT    
Sbjct: 224 ISPSSSAGSPSSSTPSPPLFSIRSASGGPSKRGTTITITPRRSAGSSSPGSTPTATSPTA 283

Query: 429 PTECRDTLLST 461
           P     T   T
Sbjct: 284 PKAAPQTQTPT 294


>UniRef50_Q82NG8 Cluster: Putative uncharacterized protein; n=1;
           Streptomyces avermitilis|Rep: Putative uncharacterized
           protein - Streptomyces avermitilis
          Length = 165

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +3

Query: 318 SVAGRXPGESSGTRVSPRRAQGSSAQSKRNSATLHPRPTECRDTLL 455
           +V GR PG  +G   SPRRA+G   +S R     H R    RD  L
Sbjct: 11  AVHGRLPGSRAGA--SPRRAEGRHRRSGRRGGRWHRRLLAYRDVEL 54


>UniRef50_Q1MQL1 Cluster: Putative uncharacterized protein LI0662;
           n=1; Lawsonia intracellularis PHE/MN1-00|Rep: Putative
           uncharacterized protein LI0662 - Lawsonia
           intracellularis (strain PHE/MN1-00)
          Length = 1000

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
 Frame = +3

Query: 195 NIVSSTKRKKCLSTHSTAAAYVAPLVSCGPTSLRPGLQSI-----------RSVAGRXPG 341
           N  +S K   CLS  S+A +  +P+  CGP S+   LQ++           ++ +   P 
Sbjct: 564 NSDNSLKNNDCLSPQSSANS--SPI--CGPDSILQRLQAVATKLEIFQQQQQTSSSSNPD 619

Query: 342 ESSGTRVSPRRAQGSSAQSKRNSATLHPRPTECRDT 449
           +  GT +       S  Q  RNSAT H   TE  DT
Sbjct: 620 QIDGT-LQHSSYVSSPQQPSRNSATYHSSNTESPDT 654


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,448,896
Number of Sequences: 1657284
Number of extensions: 10983055
Number of successful extensions: 30194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 28983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30170
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)