Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120833.seq
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    31   0.18 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.3  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   3.8  

>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 271 YHADRRACDQGSKVYEALQGEXPANPPVHASVHAALRAPAPNLNVTAPHYT 423
           Y+  R A    S  Y+  Q   P  PP     H   +A +PNL   +P ++
Sbjct: 478 YYNKRNAVTTPSSPYDGAQSGSPQFPPFELPPHNYSQAQSPNLATPSPSFS 528


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +3

Query: 192  INIVSSTKRKKCLSTHSTAAAYVAPLVSCGPTSLRPGLQSIRSVAGRXPG--ESSGTRVS 365
            I + SST +    S+ STA++Y+A   S    S  P   S  S          ++   V 
Sbjct: 921  ITVTSSTLKPSLTSSVSTASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLTVK 980

Query: 366  PRRAQGSSAQSKRNSAT 416
            P  +  SS  S   S++
Sbjct: 981  PESSLSSSTTSGLTSSS 997


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 523 YCHLNLKKHSATSFFTVYPIRCT 591
           + HL++  HS+T FF  + + C+
Sbjct: 174 HVHLSIMSHSSTPFFKSFDLNCS 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,576
Number of Sequences: 5004
Number of extensions: 43815
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)