Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120833.seq
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    30   1.7  
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162     30   1.7  
01_01_0012 + 71903-72935,73468-73981,74619-76008                       29   2.3  
10_05_0067 + 8756044-8756075,8756180-8756357,8756800-8757471           28   6.9  
03_01_0044 + 375720-376523                                             28   6.9  
12_02_0529 - 20067974-20068588,20069982-20070048,20070156-200702...    27   9.1  
03_01_0411 + 3168593-3168829,3169217-3170209                           27   9.1  

>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 231 STHSTAAAYVAPLVS--CGPTSLRPGLQSIRSVAGRXPGESSGTRVSPRRAQGSSAQ 395
           ST +  AA + P ++  C P SL+P   S R   G   G   G   +  R QG   +
Sbjct: 802 STAAAEAARIPPAMATACPPLSLQPAYLSGRGYGGDGGGRDGGGAAAGERDQGEEGR 858


>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
          Length = 213

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 328 GEXPANPPVHASVHAALRAPAPNLNVTAPHYTPDQQNVGTRYYRQS 465
           G   A  P  +S  A  RAP+P+ + +AP      Q+ GT + R S
Sbjct: 111 GHAHAAAPSPSSSWAPARAPSPDASASAPDSAAPGQSGGTAFIRSS 156


>01_01_0012 + 71903-72935,73468-73981,74619-76008
          Length = 978

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 288 SLRPGLQSIRSVAG-RXPGESSGTRVSPRRAQGSSAQSKRN 407
           SL P      + AG R PG+  G+++SP R   SS +S+R+
Sbjct: 629 SLSPSKSRRSARAGSRSPGQHKGSKLSPTRDHHSSRRSRRS 669


>10_05_0067 + 8756044-8756075,8756180-8756357,8756800-8757471
          Length = 293

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 97 CQSWSSHFITQYDIPFVRD 41
          C+SW+S F+ +++IP  +D
Sbjct: 5  CKSWASRFLKEHEIPKAKD 23


>03_01_0044 + 375720-376523
          Length = 267

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 225 CLSTHSTAAAYVAPLVSCGPTSLRPGLQSIRSVAGRXPGESSGT 356
           CL      AA +   VSCGP  + PG  +I +  G+   E+ GT
Sbjct: 5   CLLLACVVAAAMVSAVSCGPPKVPPG-PNITAAYGKQWLEARGT 47


>12_02_0529 -
           20067974-20068588,20069982-20070048,20070156-20070264,
           20070357-20070402,20070501-20070636,20070745-20070866,
           20070944-20071306,20071914-20072043,20072129-20072202,
           20072620-20072709,20072836-20072875,20073047-20073117,
           20074248-20074277
          Length = 630

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 318 SVAGRXPGESSGTRVSPRRAQGSSAQSKR 404
           S++G  PG + G ++SPR  +G +  ++R
Sbjct: 410 SLSGGAPGRTRGLKISPRARRGQARGAER 438


>03_01_0411 + 3168593-3168829,3169217-3170209
          Length = 409

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 516 NLILSFKFEKAQRYLLFHCVPYKVYRRIC 602
           NL+L +K EK  +  +  C PY V  R C
Sbjct: 78  NLVLEWKLEKLIKEGIRDCEPYSVIIRFC 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,883,517
Number of Sequences: 37544
Number of extensions: 308956
Number of successful extensions: 1003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)