Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120833.seq
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)                  28   5.3  
SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1)                       28   7.0  
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)                    27   9.3  
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)                       27   9.3  

>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 252 AYVAPLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRVSPRRAQGSSAQSKRNS 410
           A++ P V+C  +S     +S  S +      SS +  S   + GSS+ S  NS
Sbjct: 107 AFLVPYVTCTSSSSSNSSRSSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNS 159


>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 286 RACDQGSKVYEALQGEXPANPPVHASVHAALRAP 387
           R+C +  KV E L+G+ P N    +  H   ++P
Sbjct: 483 RSCKEPGKVQEGLKGQAPGNSHHRSEKHVEAQSP 516


>SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)
          Length = 872

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 340 ANPPVHASVHAALRAPAPNLNVTAPHYTPDQQNVGT 447
           AN P   S      +PAP+   T PH  P + N+GT
Sbjct: 816 ANTP-EKSPSKTSASPAPDTEQTPPHPPPPKSNIGT 850


>SB_31746| Best HMM Match : HR1 (HMM E-Value=2.1)
          Length = 398

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 369 RRAQGSSAQSKRNSATLHPRPTECRDTLLSTKL 467
           ++ +G S + K+ S T  P PT+C +  L + +
Sbjct: 176 KKERGESQRGKKKSITQDPPPTDCSEAQLQSTI 208


>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
          Length = 884

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
 Frame = +3

Query: 201 VSSTKRKKCLSTHSTAAAYVAPLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRVSPRRAQ 380
           V    +  CL+        + P +  G   L P L+++ +     PG SS T +SPR   
Sbjct: 516 VGHKDQHNCLTQSPRVELSLCPPI-VGSDRLLPQLENVHNSKSPQPGRSSPTYMSPRTRN 574

Query: 381 GSSAQSK------RNSATLHPRPT-------ECRDTLLSTKLNY*VTVKHTNCFI-NSIN 518
              ++S+       N      RP+       + + +L  TK+N   T  +   F+ NS+N
Sbjct: 575 ILLSKSRTLPDIPENKKIKDERPSPRKLHLQKNKPSLPPTKIN---TYSNIGYFLDNSLN 631

Query: 519 LILSFKFEK 545
                KFEK
Sbjct: 632 RFARNKFEK 640


>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 890

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 349 PVHASVHAALRAPAPNLNVTAPHYTPDQQ 435
           P+ A+ HA + A A NLN      TPDQ+
Sbjct: 156 PIKAARHAYIFALASNLNCACVKCTPDQR 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,274,872
Number of Sequences: 59808
Number of extensions: 350833
Number of successful extensions: 1077
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)