Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120833.seq
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321364-1|AAP84718.1| 3241|Drosophila melanogaster PHD zinc fin...    31   1.7  
AE014296-31|AAS64921.1| 3241|Drosophila melanogaster CG7036-PB, ...    31   1.7  
AE014296-30|AAF47343.1| 3201|Drosophila melanogaster CG7036-PA, ...    31   1.7  
X66270-1|CAA46985.1|  497|Drosophila melanogaster ems W13 protein.     30   2.2  
X51653-1|CAA35965.1|  494|Drosophila melanogaster empty spiracle...    30   2.2  
BT021310-1|AAX33458.1|  494|Drosophila melanogaster RE15812p pro...    30   2.2  
AE014297-1771|AAF54999.1|  494|Drosophila melanogaster CG2988-PA...    30   2.2  

>AY321364-1|AAP84718.1| 3241|Drosophila melanogaster PHD zinc finger
           protein rhinoceros protein.
          Length = 3241

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 210 TKRKKCLSTHSTAAAYVAPLVSCGPT--SLRPGLQSIRSVAGRXPGESSGTRVSPRRAQG 383
           TKR+K    +    A VA +   GP   S R  +  +       PG  +G     R A G
Sbjct: 35  TKRRKGRPPNGATTAAVAEVTGSGPATGSERVPVLPLCKSKHEEPGAEAGGGGQGRAAAG 94

Query: 384 SSAQSKRNSATLHPRPTECR 443
           +++ SK  S  L    ++C+
Sbjct: 95  ATSTSKSKSTKLAKSASKCK 114


>AE014296-31|AAS64921.1| 3241|Drosophila melanogaster CG7036-PB,
           isoform B protein.
          Length = 3241

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 210 TKRKKCLSTHSTAAAYVAPLVSCGPT--SLRPGLQSIRSVAGRXPGESSGTRVSPRRAQG 383
           TKR+K    +    A VA +   GP   S R  +  +       PG  +G     R A G
Sbjct: 35  TKRRKGRPPNGATTAAVAEVTGSGPATGSERVPVLPLCKSKHEEPGAEAGGGGQGRAAAG 94

Query: 384 SSAQSKRNSATLHPRPTECR 443
           +++ SK  S  L    ++C+
Sbjct: 95  ATSTSKSKSTKLAKSASKCK 114


>AE014296-30|AAF47343.1| 3201|Drosophila melanogaster CG7036-PA,
           isoform A protein.
          Length = 3201

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 210 TKRKKCLSTHSTAAAYVAPLVSCGPT--SLRPGLQSIRSVAGRXPGESSGTRVSPRRAQG 383
           TKR+K    +    A VA +   GP   S R  +  +       PG  +G     R A G
Sbjct: 35  TKRRKGRPPNGATTAAVAEVTGSGPATGSERVPVLPLCKSKHEEPGAEAGGGGQGRAAAG 94

Query: 384 SSAQSKRNSATLHPRPTECR 443
           +++ SK  S  L    ++C+
Sbjct: 95  ATSTSKSKSTKLAKSASKCK 114


>X66270-1|CAA46985.1|  497|Drosophila melanogaster ems W13 protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 331 EXPANPPVHASVHAALRAPAPNLNVTAPHYTPDQQ 435
           + P  PP   S  ++  + +P L +++PH TP QQ
Sbjct: 202 QPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQ 236


>X51653-1|CAA35965.1|  494|Drosophila melanogaster empty spiracles
           homeotic protein protein.
          Length = 494

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 331 EXPANPPVHASVHAALRAPAPNLNVTAPHYTPDQQ 435
           + P  PP   S  ++  + +P L +++PH TP QQ
Sbjct: 199 QPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQ 233


>BT021310-1|AAX33458.1|  494|Drosophila melanogaster RE15812p
           protein.
          Length = 494

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 331 EXPANPPVHASVHAALRAPAPNLNVTAPHYTPDQQ 435
           + P  PP   S  ++  + +P L +++PH TP QQ
Sbjct: 199 QPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQ 233


>AE014297-1771|AAF54999.1|  494|Drosophila melanogaster CG2988-PA
           protein.
          Length = 494

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 331 EXPANPPVHASVHAALRAPAPNLNVTAPHYTPDQQ 435
           + P  PP   S  ++  + +P L +++PH TP QQ
Sbjct: 199 QPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQ 233


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,309,508
Number of Sequences: 53049
Number of extensions: 507136
Number of successful extensions: 1587
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)