Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120833.seq
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-2|CAB04970.1|  263|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    30   1.5  
Z83235-1|CAB05775.1|  174|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z68338-5|CAA92758.1|  203|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic helix-loo...    28   6.2  

>Z82083-2|CAB04970.1|  263|Caenorhabditis elegans Hypothetical
           protein ZK1010.4 protein.
          Length = 263

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 189 LINIVSSTKRKKCLSTHSTAAAYVA--PLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRV 362
           L+ +  +   + CLS+    ++Y A  P VSC P+S +PG    +    R    S+ T+ 
Sbjct: 9   LVLVAGAVVTEACLSSGVCGSSYCAAPPAVSCSPSSCQPGYSCGQYGCARNRARSAVTQK 68

Query: 363 SPRRAQGSSAQSKRNS 410
                   S  SK NS
Sbjct: 69  VEGIFIDDSGNSKENS 84


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 213  KRKKCLSTHSTAAAYVAPLVSCGPTS--LRPGLQSIRSVAGRXPGESSGTRVSPRRAQGS 386
            +R+    T ++    V P +S   +S    P  ++   +    P  S G+++SP  A  S
Sbjct: 1071 RRQSSGRTPASQLQLVIPSISSSQSSQSAEPARETCYVMYPSGPSTSVGSQLSPGGASVS 1130

Query: 387  SAQSKRNSATLHPRPTECRDTLLS 458
            SA S  +  + HP P      L S
Sbjct: 1131 SASSSNDVGSPHPLPLHHEHPLTS 1154


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 213  KRKKCLSTHSTAAAYVAPLVSCGPTS--LRPGLQSIRSVAGRXPGESSGTRVSPRRAQGS 386
            +R+    T ++    V P +S   +S    P  ++   +    P  S G+++SP  A  S
Sbjct: 1071 RRQSSGRTPASQLQLVIPSISSSQSSQSAEPARETCYVMYPSGPSTSVGSQLSPGGASVS 1130

Query: 387  SAQSKRNSATLHPRPTECRDTLLS 458
            SA S  +  + HP P      L S
Sbjct: 1131 SASSSNDVGSPHPLPLHHEHPLTS 1154


>Z83235-1|CAB05775.1|  174|Caenorhabditis elegans Hypothetical
           protein K10C3.2 protein.
          Length = 174

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 301 GSKVYEALQGEXPANPPVHASVHAALRAPAPNLNVTAPHYTPDQQ 435
           GSK +    G  PA PPV      A R+PAP     +P  +P  Q
Sbjct: 76  GSKPHPLAGGPPPAAPPV-----VAQRSPAPAATTPSPSASPISQ 115


>Z68338-5|CAA92758.1|  203|Caenorhabditis elegans Hypothetical
           protein T24B8.6 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +1

Query: 337 PANPPVHASVHAALRAPAPNLNVTAPHYTP------DQQNVGTRYYRQS 465
           P   PV+     ++ A  P+ + T+P+Y P      +Q ++ + YY++S
Sbjct: 134 PEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHYYQES 182


>U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic
           helix-loop-helix DNA bindingprotein HLH-3 protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +1

Query: 337 PANPPVHASVHAALRAPAPNLNVTAPHYTP------DQQNVGTRYYRQS 465
           P   PV+     ++ A  P+ + T+P+Y P      +Q ++ + YY++S
Sbjct: 101 PEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHYYQES 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,361,490
Number of Sequences: 27780
Number of extensions: 253383
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)