Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120833.seq
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37560.1 68417.m05316 formamidase, putative / formamide amido...    30   1.1  
At4g37550.1 68417.m05314 formamidase, putative / formamide amido...    30   1.1  
At3g30810.1 68416.m03942 hypothetical protein                          28   4.3  

>At4g37560.1 68417.m05316 formamidase, putative / formamide
           amidohydrolase, putative similar to SP|Q50228
           Formamidase (EC 3.5.1.49) (Formamide amidohydrolase)
           {Methylophilus methylotrophus}; contains Pfam profile
           PF03069: Acetamidase/Formamidase family
          Length = 452

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 480 TVKHTNCFINSINLILSFKFEKAQRYLLFHCVP 578
           TV +    +N+I+ +  F + K Q YLL  C P
Sbjct: 353 TVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCP 385


>At4g37550.1 68417.m05314 formamidase, putative / formamide
           amidohydrolase, putative similar to SP|Q50228
           Formamidase (EC 3.5.1.49) (Formamide amidohydrolase)
           {Methylophilus methylotrophus}; contains Pfam profile
           PF03069: Acetamidase/Formamidase family
          Length = 452

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 480 TVKHTNCFINSINLILSFKFEKAQRYLLFHCVP 578
           TV +    +N+I+ +  F + K Q YLL  C P
Sbjct: 353 TVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCP 385


>At3g30810.1 68416.m03942 hypothetical protein 
          Length = 791

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 228 LSTHSTAAAYVAPLVSCGPTSLRPGLQSIRSVAGRXPGESSGTRVSPRRA 377
           LST  TAA +   + S   ++  P +  I + A    G S     SP+RA
Sbjct: 280 LSTAMTAARHTLAVSSASASASHPSIPEINTGASAVAGRSDCAPSSPKRA 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,085
Number of Sequences: 28952
Number of extensions: 231888
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)