Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120831.seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    81   1e-16
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    27   2.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.6  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    26   5.9  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
 Frame = +1

Query: 22  VHGKIYFQQESANRPLKISGYLL-NLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHG 198
           V G + F+Q   N  + +   L+ N      GFH+H++GD +NGCTSAG HFNP  + HG
Sbjct: 14  VSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHG 73

Query: 199 APDAEIRHVGDLGNIKS 249
              A +RHVGDLGN++S
Sbjct: 74  DRTAAVRHVGDLGNLES 90



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = +3

Query: 285 DNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 437
           D+V+SL+G ++IIGR++V+H  +DDLG      S  TGN+  R  CG+I I
Sbjct: 102 DSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
 Frame = -1

Query: 428 YSASQTAVRIAGCFAQ-RMLGKAQIVFVRV----HDQTSSYNIMRAI*RHNVVHHVYFGQ 264
           YS+S TA +I  C +    L  +    ++V     ++ +S NI  A+    +   V   Q
Sbjct: 69  YSSSNTARKIFICTSSVSNLASSIPALIKVVTPTKEEDASLNINLAVSSLILGSKVLIHQ 128

Query: 263 RIVPTDFMLPKSPTCLISASGAPWSS--LVGLKCSPADVQPLL 141
            ++P+ F +  S   L SAS  P SS  LV L+ +  D   ++
Sbjct: 129 NLIPSLFSVSNSTKLLYSASLLPRSSERLVTLETNEIDASVVI 171


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 476  LLVKRVKAMTSFTYGNYSASQTAV-RIAGCFAQRMLGKAQIVF 351
            L+++RV +++   YGN   +QTA+  +A   + ++L +  +++
Sbjct: 3653 LIMRRVASLSQVAYGNLPVNQTAIDYLAQASSSKVLAQMDVLW 3695


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +1

Query: 19  DVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSA------GEHFNP 180
           D +G+I     S    LK +G + + P   HGF +  + + S+  T A      GEH + 
Sbjct: 183 DKNGRIAVVSSSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHSSTCAVATSGTGEHISN 242

Query: 181 T 183
           T
Sbjct: 243 T 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,771
Number of Sequences: 5004
Number of extensions: 62198
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)