Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120831.seq
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 98 5e-21
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 95 5e-20
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 94 1e-19
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 92 4e-19
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 37 0.018
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.071
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884... 33 0.22
01_05_0215 + 19374279-19374327,19374629-19374633,19376902-193769... 31 1.2
11_06_0683 + 26259129-26259968 30 2.0
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 30 2.0
01_06_0490 + 29759801-29759880,29759881-29759980,29760468-297605... 29 2.7
11_06_0008 - 19181933-19182009,19185148-19185691 29 4.7
01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255 29 4.7
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/77 (57%), Positives = 52/77 (67%)
Frame = +1
Query: 13 SGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNED 192
S V G I+F QE + P ++G + L GLHGFHVH GDT+NGC S G HFNPT ++
Sbjct: 11 SEGVKGTIFFSQEG-DGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKE 69
Query: 193 HGAPDAEIRHVGDLGNI 243
HGAP E RH GDLGNI
Sbjct: 70 HGAPQDENRHAGDLGNI 86
Score = 72.1 bits (169), Expect = 4e-13
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = +3
Query: 258 NSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 437
+ + +N+ D+ + L G H+IIGR++VVH D DDLG H LSKTTGN+ GR+ CGII +
Sbjct: 91 DGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 95.1 bits (226), Expect = 5e-20
Identities = 39/74 (52%), Positives = 51/74 (68%)
Frame = +1
Query: 22 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 201
V G ++F Q+ + ++ G + L GLHGFH+H +GDT+NGC S G HFNP N+ HGA
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 202 PDAEIRHVGDLGNI 243
P + RHVGDLGNI
Sbjct: 83 PSDDERHVGDLGNI 96
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +3
Query: 258 NSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLG 365
+ + +I + D +SL GPH+I+GR++VVH D DDLG
Sbjct: 101 DGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLG 136
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 93.9 bits (223), Expect = 1e-19
Identities = 39/74 (52%), Positives = 51/74 (68%)
Frame = +1
Query: 22 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 201
V G I+F QE + P ++G + L GLHGFH+H GDT+NGC S G H+NP ++HGA
Sbjct: 132 VKGTIHFVQEG-DGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGA 190
Query: 202 PDAEIRHVGDLGNI 243
P+ E RH GDLGN+
Sbjct: 191 PEDETRHAGDLGNV 204
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/60 (51%), Positives = 45/60 (75%)
Frame = +3
Query: 258 NSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 437
+ + I+++D+ + L GP++IIGR++VVH D DDLG H LSKTTGN+ GR+ CGII +
Sbjct: 209 DGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 91.9 bits (218), Expect = 4e-19
Identities = 39/77 (50%), Positives = 50/77 (64%)
Frame = +1
Query: 13 SGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNED 192
+ V G + Q+ P ++ + L GLHGFH+HE+GDT+NGC S G HFNP N
Sbjct: 61 TSQVEGVVTLTQDDQG-PTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLT 119
Query: 193 HGAPDAEIRHVGDLGNI 243
HGAP+ E+RH GDLGNI
Sbjct: 120 HGAPEDEVRHAGDLGNI 136
Score = 61.7 bits (143), Expect = 5e-10
Identities = 25/58 (43%), Positives = 40/58 (68%)
Frame = +3
Query: 264 LTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 437
+ E ++D + L GP++++GR+ VVH +DDLG H LS +TGN+ GRL CG++ +
Sbjct: 143 VAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 200
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 94 LPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGNIKS 249
L G HG+ ++E+GD + G S G+ +NP++ P +GDLG +++
Sbjct: 199 LSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEA 244
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.071
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 106 LHGFHVHEYGDTSNGCTSAG 165
LHGFHVH G T+NGC G
Sbjct: 50 LHGFHVHALGGTTNGCMRNG 69
>03_02_0710 +
10587969-10588069,10588181-10588262,10588362-10588414,
10588828-10589315,10589415-10589575,10589699-10589896,
10590091-10590277,10590355-10590611
Length = 508
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 43 QQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 189
Q +S P + +LNLP+G H F E +S C + P NE
Sbjct: 397 QSQSVQMPASENAQILNLPQGAHCFPSGELPSSSQDCLLNPLQYQPLNE 445
>01_05_0215 +
19374279-19374327,19374629-19374633,19376902-19376956,
19377159-19377334,19378020-19378241,19378334-19378572,
19379201-19379726,19379801-19380074,19380524-19381187,
19381604-19381832,19381924-19382190,19382308-19382496,
19382664-19383308
Length = 1179
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 7 EISGDVHGK-IYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHF-NP 180
++ GDV K +YF S L G+ L +P G V E G + S E F +P
Sbjct: 293 DVKGDVELKNVYFSYPSRPEHLVFDGFSLQVPSGTRMALVGESGSGKSTVISLVERFYDP 352
Query: 181 TNEDHGAPDAEIRHVGDLGNIK 246
+ + +IR + +LG+I+
Sbjct: 353 QSGEVLIDGVDIRRI-NLGSIR 373
>11_06_0683 + 26259129-26259968
Length = 279
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 97 PRGLHGFHVHEYGDTSNGCTSAG-EHFNPTNEDHGAPDAEIRHV 225
P +G+H+H T C AG H++P+ + D +RH+
Sbjct: 224 PPPCYGYHLHYCHCTHGHCHCAGGRHYSPSYYSDDSADVRLRHM 267
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 225 WRLGQHKVGWYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNS 404
W G K + + L + ++ + SL GPH +IG V + D+GL P S+ N
Sbjct: 668 WNKGGIKKHFISKLPPVLVIHLMRSLLGPHKVIGH--VRFKEILDMGLFMDPSSEDKDNL 725
Query: 405 DGRL 416
RL
Sbjct: 726 SYRL 729
>01_06_0490 +
29759801-29759880,29759881-29759980,29760468-29760574,
29761305-29761554,29761989-29762111,29762471-29762638,
29762741-29762878,29763206-29763235
Length = 331
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 79 GYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPD 207
G+ L+ RG G +VH+Y + S + GE+++ + +G D
Sbjct: 103 GWRLDFVRGFWGGYVHDYLEASEPYFAVGEYWDSLSYTYGEMD 145
>11_06_0008 - 19181933-19182009,19185148-19185691
Length = 206
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 427 IPHPKRPSELPVVLLNGCSVRPRSSLSVCTTKLL 326
+ HP+ P LPV+L G P SSL+ +T+LL
Sbjct: 120 VSHPQAPPLLPVLLELGGLRAPVSSLASLSTRLL 153
>01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255
Length = 190
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -2
Query: 388 LLNGCSVRPRSS-LSVCTTKLLPIILCGPYKDITLSIMFISVSELYQPTLCCPSRQHA*F 212
+L C+ + S + C K L ++ C P ++ L + S CCPS + F
Sbjct: 21 ILAACNAKSLLSYVKSCAVKKLKLV-CKPLPNVRLHLCRPYGSR------CCPSSSSSPF 73
Query: 211 QHRERRGPHW 182
R R PHW
Sbjct: 74 ALRHPRHPHW 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,547,312
Number of Sequences: 37544
Number of extensions: 395272
Number of successful extensions: 915
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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