Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120831.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                90   1e-18
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                61   7e-10
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.29 
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         29   2.7  
SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)                     28   8.3  
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 36/61 (59%), Positives = 44/61 (72%)
 Frame = +1

Query: 61  RPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGN 240
           +P KI+G +  L  G HGFH+H YGD +NGC SAG HFNP  ++HG P  E RHVGDLGN
Sbjct: 26  KPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGN 85

Query: 241 I 243
           +
Sbjct: 86  V 86



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 30/55 (54%), Positives = 42/55 (76%)
 Frame = +3

Query: 273 INMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 437
           I+M D +++L G H+++GRS+VVH D+DDLG   H  SKTTG++ GRL CG+I I
Sbjct: 96  IDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIGI 150


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +3

Query: 315 NIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIA 434
           +IIGR++VVH D+DDLG   H LSK+TGNS  R+GCGIIA
Sbjct: 29  DIIGRAIVVHADEDDLGRGGHELSKSTGNSGARVGCGIIA 68


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +1

Query: 193 HGAPDAEIRHVGDLGNIKS 249
           HGAP+ + RH+GDLGNI++
Sbjct: 2   HGAPEDKDRHLGDLGNIEA 20



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +3

Query: 258 NSLTEINMMDNVMSLYGPHNIIGRSLV 338
           N + ++++ D ++SL G  +IIGRSLV
Sbjct: 23  NGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
 Frame = +1

Query: 7   EISGDVHGKIYFQQESANRPLKISGYL-LNLPRGL----HGFHVHE--YGD-----TSNG 150
           E+ G +    Y   ++   PL  + YL L L  G     H +HVHE   GD       +G
Sbjct: 348 EVIGHILMTQYRSTQANAAPLDTAIYLDLKLKDGAKTTDHNWHVHEKPVGDDMTKPVDDG 407

Query: 151 -CTSAGEHFNPTNED 192
            C+S G H+NP N D
Sbjct: 408 RCSSLGPHYNPYNVD 422


>SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +1

Query: 121 VHEYGDTSNGCTSAGEHFNPTNED-HGA----PDAEIRHVGDLGNIKSVGT 258
           ++ Y  T    TS     N T E+ +G     PD E++ V D+GNI ++GT
Sbjct: 326 IYLYASTETFMTSIQIVTNQTREEQYGVMSIVPDVEVKVVDDVGNIVAMGT 376


>SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)
          Length = 375

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 244 LCCPSRQHA*FQHRERRGPHWWD 176
           L CPSR HA    R RR   +WD
Sbjct: 104 LRCPSRSHAMRSMRTRRRARYWD 126


>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 325  PIILCGPYKDITLSIMFISVSELYQPTLCCPSRQHA*FQHRER 197
            P++L GP  DI +  + +    +Y     C S   A F  +ER
Sbjct: 1152 PVVLLGPLADIAIDKLLMDQPHVYAVPTLCHSYNTAGFIEQER 1194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,060,883
Number of Sequences: 59808
Number of extensions: 487934
Number of successful extensions: 1100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)