Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120831.seq
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 101 6e-22
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 101 6e-22
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 101 6e-22
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 101 6e-22
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 94 1e-19
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 90 1e-18
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 90 1e-18
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 90 1e-18
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.002
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 29 4.2
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 28 7.3
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 101 bits (241), Expect = 6e-22
Identities = 43/76 (56%), Positives = 54/76 (71%)
Frame = +1
Query: 22 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 201
V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP + HG
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 73
Query: 202 PDAEIRHVGDLGNIKS 249
P +EIRHVGDLGN+++
Sbjct: 74 PKSEIRHVGDLGNVEA 89
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +3
Query: 231 LGQHKVGWYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 401
LG + G + + +I + D +++LYGP+ ++GRS+VVH +DDLG + SK TGN
Sbjct: 84 LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 142
Query: 402 SDGRLGCGIIAI 437
+ R CG+IA+
Sbjct: 143 AGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 101 bits (241), Expect = 6e-22
Identities = 43/76 (56%), Positives = 54/76 (71%)
Frame = +1
Query: 22 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 201
V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP + HG
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 73
Query: 202 PDAEIRHVGDLGNIKS 249
P +EIRHVGDLGN+++
Sbjct: 74 PKSEIRHVGDLGNVEA 89
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +3
Query: 231 LGQHKVGWYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 401
LG + G + + +I + D +++LYGP+ ++GRS+VVH +DDLG + SK TGN
Sbjct: 84 LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 142
Query: 402 SDGRLGCGIIAI 437
+ R CG+IA+
Sbjct: 143 AGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 101 bits (241), Expect = 6e-22
Identities = 43/76 (56%), Positives = 54/76 (71%)
Frame = +1
Query: 22 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 201
V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP + HG
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 73
Query: 202 PDAEIRHVGDLGNIKS 249
P +EIRHVGDLGN+++
Sbjct: 74 PKSEIRHVGDLGNVEA 89
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +3
Query: 231 LGQHKVGWYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 401
LG + G + + +I + D +++LYGP+ ++GRS+VVH +DDLG + SK TGN
Sbjct: 84 LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 142
Query: 402 SDGRLGCGIIAI 437
+ R CG+IA+
Sbjct: 143 AGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 101 bits (241), Expect = 6e-22
Identities = 43/76 (56%), Positives = 54/76 (71%)
Frame = +1
Query: 22 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 201
V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP + HG
Sbjct: 36 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 95
Query: 202 PDAEIRHVGDLGNIKS 249
P +EIRHVGDLGN+++
Sbjct: 96 PKSEIRHVGDLGNVEA 111
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +3
Query: 231 LGQHKVGWYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 401
LG + G + + +I + D +++LYGP+ ++GRS+VVH +DDLG + SK TGN
Sbjct: 106 LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 164
Query: 402 SDGRLGCGIIAI 437
+ R CG+IA+
Sbjct: 165 AGARAACGVIAL 176
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 93.9 bits (223), Expect = 1e-19
Identities = 36/76 (47%), Positives = 53/76 (69%)
Frame = +1
Query: 22 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 201
V G ++ Q++ + G + L GLHGFH+H+YGD+++GCTSAG HFNP +HG
Sbjct: 34 VFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGG 93
Query: 202 PDAEIRHVGDLGNIKS 249
D+ +RHVGDLGN+++
Sbjct: 94 RDSVVRHVGDLGNVEA 109
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Frame = +3
Query: 231 LGQHKVGWYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 401
LG + G + + +I D V+SL+G + +IGRS+VVH D+DDLG + S TGN
Sbjct: 104 LGNVEAG-ADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGN 162
Query: 402 SDGRLGCGIIAI 437
+ R CG+IA+
Sbjct: 163 AGARAACGVIAL 174
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/81 (51%), Positives = 53/81 (65%)
Frame = +1
Query: 7 EISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTN 186
+I ++ G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP
Sbjct: 35 KIPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHK 92
Query: 187 EDHGAPDAEIRHVGDLGNIKS 249
HGAPD RH+GDLGNI+S
Sbjct: 93 LSHGAPDDSNRHIGDLGNIES 113
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = +3
Query: 267 TEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGII 431
T I++ D++ SL G ++IIGRS+V+H DDLG SKTTGN+ RL CG I
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTI 173
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/81 (51%), Positives = 53/81 (65%)
Frame = +1
Query: 7 EISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTN 186
+I ++ G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP
Sbjct: 35 KIPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHK 92
Query: 187 EDHGAPDAEIRHVGDLGNIKS 249
HGAPD RH+GDLGNI+S
Sbjct: 93 LSHGAPDDSNRHIGDLGNIES 113
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +3
Query: 267 TEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 437
T I++ D++ SL G ++IIGRS+V+H DDLG SKTTGN+ RL CG I I
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGI 175
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/81 (51%), Positives = 53/81 (65%)
Frame = +1
Query: 7 EISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTN 186
+I ++ G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP
Sbjct: 35 KIPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHK 92
Query: 187 EDHGAPDAEIRHVGDLGNIKS 249
HGAPD RH+GDLGNI+S
Sbjct: 93 LSHGAPDDSNRHIGDLGNIES 113
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = +3
Query: 267 TEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGII 431
T I++ D++ SL G ++IIGRS+V+H DDLG SKTTGN+ RL CG I
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTI 173
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 28 GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFN 177
G+ F Q ++ L+I G + LP G H +H++GD+S GC+ G F+
Sbjct: 897 GRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 28 GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFN 177
G+ F Q ++ L+I G + LP G H +H++GD+S GC+ G F+
Sbjct: 688 GRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 736
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 271 SVSELYQPTLCCPSRQHA*FQHRERRGPHWWD*NAHRPTCN 149
S ++ Y P++ PS QHA F R G + D + +CN
Sbjct: 768 STTKAYNPSVTTPSPQHAAFCERLENGNYGLDCEDYYISCN 808
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 258 NSLTEINMMDNVMSLYGPHNIIGR 329
N L++ N+ N++S+YG N IGR
Sbjct: 378 NILSDNNVSGNILSVYGTANTIGR 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,289,911
Number of Sequences: 27780
Number of extensions: 357005
Number of successful extensions: 871
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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