Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120830.seq
(660 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 98 2e-19
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 51 3e-05
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 44 0.002
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 42 0.017
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 42 0.017
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 41 0.030
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 37 0.49
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 36 0.65
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 36 0.86
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 36 0.86
UniRef50_A2QIU7 Cluster: Contig An04c0140, complete genome; n=5;... 34 2.6
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 33 4.6
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 33 4.6
UniRef50_A6PS51 Cluster: Putative uncharacterized protein precur... 33 8.0
UniRef50_A0D1Q4 Cluster: Chromosome undetermined scaffold_34, wh... 33 8.0
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 97.9 bits (233), Expect = 2e-19
Identities = 48/53 (90%), Positives = 49/53 (92%)
Frame = +1
Query: 268 MAFTNLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQVNSKLM*NLNSL 426
MAFTNLVDTLANTIHRDAITAPLVETAISNF HKLQLYPYQVNSKL+ LN L
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQL 53
Score = 80.2 bits (189), Expect = 4e-14
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = +2
Query: 437 MAFTNLVDTLANTIHRDAITASPSETAISNFRHKLQLYPYQ 559
MAFTNLVDTLANTIHRDAITA ETAISNFRHKLQLYPYQ
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQ 41
Score = 60.9 bits (141), Expect = 3e-08
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +1
Query: 109 ANTIHRDAITAPLVETAISNFRHKLQLLP 195
ANTIHRDAITAPLVETAISNFRHKLQL P
Sbjct: 11 ANTIHRDAITAPLVETAISNFRHKLQLYP 39
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/53 (41%), Positives = 37/53 (69%)
Frame = +1
Query: 268 MAFTNLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQVNSKLM*NLNSL 426
MAF +D L++T HRD+I+APL+++++S L+L+PY V +L+ LN +
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELVPQLNRM 53
Score = 39.5 bits (88), Expect = 0.070
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = +2
Query: 437 MAFTNLVDTLANTIHRDAITASPSETAISNFRHKLQLYPY 556
MAF +D L++T HRD+I+A ++++S + L+L+PY
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPY 40
Score = 34.3 bits (75), Expect = 2.6
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = +1
Query: 109 ANTIHRDAITAPLVETAISNFRHKLQLLP 195
++T HRD+I+APL+++++S + L+L P
Sbjct: 11 SSTTHRDSISAPLLDSSVSQLQSSLELFP 39
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 44.4 bits (100), Expect = 0.002
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = +1
Query: 268 MAFTNLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQVNSK 402
MAF + + L++T+HRD + APL+E+ L+LYP+ +N++
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
Score = 36.3 bits (80), Expect = 0.65
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 437 MAFTNLVDTLANTIHRDAITASPSETAISNFRHKLQLYPY 556
MAF + + L++T+HRD + A E+ R L+LYP+
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPW 40
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 41.5 bits (93), Expect = 0.017
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 283 LVDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQV 393
LV+ L T+HRD + +PLVE A LQLYPY +
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
Score = 36.3 bits (80), Expect = 0.65
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 422 PYSSSMAFTNLVDTLANTIHRDAITASPSETAISNFRHKLQLYPY 556
P S LV+ L T+HRD + + E A R LQLYPY
Sbjct: 127 PALSGGGLKELVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPY 171
Score = 33.9 bits (74), Expect = 3.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 115 TIHRDAITAPLVETAISNFRHKLQLLP 195
T+HRD + +PLVE A R LQL P
Sbjct: 144 TVHRDTVCSPLVEAAAGPLRDSLQLYP 170
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 41.5 bits (93), Expect = 0.017
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 268 MAFTNLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQVNSKLM*NLNS 423
MAF +D LA T HRD P++E+ + + +Q YP+ + +L+ LNS
Sbjct: 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNS 52
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/38 (44%), Positives = 28/38 (73%)
Frame = +1
Query: 280 NLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQV 393
++++TL++TIHRD I APL+ET S + L+ +P+ V
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
Score = 35.9 bits (79), Expect = 0.86
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +2
Query: 449 NLVDTLANTIHRDAITASPSETAISNFRHKLQLYPY 556
++++TL++TIHRD I A ET S +R L+ +P+
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPW 61
Score = 34.3 bits (75), Expect = 2.6
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 109 ANTIHRDAITAPLVETAISNFRHKLQLLP 195
++TIHRD I APL+ET S +R L+ P
Sbjct: 32 SSTIHRDTIAAPLMETLASPYRDSLRDFP 60
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 36.7 bits (81), Expect = 0.49
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 286 VDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQV 393
V++L T HRD ITAP+VE+ + L+ YP+ +
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSI 49
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 36.3 bits (80), Expect = 0.65
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 268 MAFTNLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPY 387
MAF + ++ L +T HRDA T P++ + + L LYP+
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
Score = 33.1 bits (72), Expect = 6.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 437 MAFTNLVDTLANTIHRDAITASPSETAISNFRHKLQLYPY 556
MAF + ++ L +T HRDA T + + R L LYP+
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 35.9 bits (79), Expect = 0.86
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +1
Query: 268 MAFTNLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQVNSKLM*NLNS 423
MAF + ++ L +T HRDA++ P++ + + L+ YP+ + + + LN+
Sbjct: 1 MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPWLLPKEALPFLNN 52
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 35.9 bits (79), Expect = 0.86
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 268 MAFTNLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQVNSKL 405
MAF +D LA+T H+D P++E+ + LQ YP+ V L
Sbjct: 1 MAFQLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDL 46
>UniRef50_A2QIU7 Cluster: Contig An04c0140, complete genome; n=5;
Pezizomycotina|Rep: Contig An04c0140, complete genome -
Aspergillus niger
Length = 416
Score = 34.3 bits (75), Expect = 2.6
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 461 TLANTIHRDAITASPSETAISNFRHKLQL 547
TL+NT H D I+ASP E I RHK +L
Sbjct: 136 TLSNTTHEDEISASPGEGWIDTPRHKKEL 164
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 33.5 bits (73), Expect = 4.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 253 GSALSMAFTNLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPY 387
G A AF +D L NTI +D I + ++ + L LYPY
Sbjct: 109 GGAPPAAFQPAIDFLHNTIQKDTIASSIIAALNPSLTSSLTLYPY 153
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 33.5 bits (73), Expect = 4.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 292 TLANTIHRDAITAPLVETAISNFCHKLQLYPYQVNSKLM*NLNS 423
+LA T HRD I PL+E + L YP+ + + L L S
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTS 140
>UniRef50_A6PS51 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 581
Score = 32.7 bits (71), Expect = 8.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 349 WRFPLGEPLWRLGGWC 302
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
Score = 32.7 bits (71), Expect = 8.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 160 WRFPLGEPLWRLGGWC 113
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
>UniRef50_A0D1Q4 Cluster: Chromosome undetermined scaffold_34, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_34,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 2195
Score = 32.7 bits (71), Expect = 8.0
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 160 ISNFRHKLQLLPISGKFQAHDINNQQSQLVPGSAL-SMAFTNLVDTLANTIHRDAITAPL 336
+SNFR KL+ L KFQ D+ +Q +L S S NL+ L RD
Sbjct: 22 LSNFRVKLKFLLSQLKFQYSDLLEEQQKLAKKSPNDSNIIQNLISNLQQADKRD----HQ 77
Query: 337 VETAISNFCHKLQLYPYQVNSKLM*NLNSL 426
+E FC+KLQ ++ + NL L
Sbjct: 78 IEQNELIFCNKLQELLRKLKKPQIENLKDL 107
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,086,955
Number of Sequences: 1657284
Number of extensions: 11954286
Number of successful extensions: 27392
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27373
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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