Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120830.seq
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   7.3  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.3  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.7  

>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 431 SSMAFTNLVDTLANTIHRDAITASPSETAISNFRHKLQLYP 553
           S  +  N    + N  +   I++ P+E  I+N  H L+L P
Sbjct: 373 SEFSIGNRNKNIGNNEYSAQISSDPAEEEIANAMHSLKLEP 413


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
 Frame = +2

Query: 338 WKPPSAISVTSFNFTHIR*IPSSCKILIPY-----SSSMAFTNLVDTLAN-----TIHRD 487
           WK P  I+ T+F F   +  PSS  ++  Y     SS   F     TL       TI++ 
Sbjct: 121 WKCPLTINTTTFKFLTRKNNPSSMSLVSNYPLDAISSQQKFHGNDKTLEKNSAKATINKS 180

Query: 488 AITASPSETA 517
             TA  S TA
Sbjct: 181 NSTAETSSTA 190


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -1

Query: 183  KLVTEIADGGFH*GSRYGVSVDGVGVKAMLSAEARDRSQGQADFVGCLCHELGI 22
            K+V +I DG F     + +  DG+ +   ++ E  D ++  ++    +   LGI
Sbjct: 1294 KIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGI 1347


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 362 VTSFNFTHIR*IPSSCKILIPYSSSMAFTNLV 457
           +TSF+F H++ I  S     PY  ++ F  LV
Sbjct: 67  MTSFDFDHVQQILLSAVQPYPYDKNLMFVYLV 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,475
Number of Sequences: 5004
Number of extensions: 46829
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)