Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120830.seq
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961 30 1.4
11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360 30 1.9
12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551 29 3.3
12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660 29 3.3
06_03_0369 + 19975703-19975931,19976197-19976239,19976799-199768... 28 5.7
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 28 5.7
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 28 5.7
10_06_0005 + 9459181-9459409,9459672-9459714,9460274-9460360,946... 28 7.6
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 28 7.6
>11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961
Length = 384
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 220 DINNQQSQLVPGSALSMAFTNLVDTLANTIHRDAITAPLVE 342
D+NNQQS P +A+SM+ + + L NTI A++ L++
Sbjct: 204 DMNNQQSDFQPMTAMSMSKSCSLTDLLNTIDCAALSQFLLD 244
>11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360
Length = 445
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -1
Query: 234 LVVYVMSLEFT*YG*KLKLVTEIADGGFH*GSRYGVSVDGVGVKAM 97
+V +MS ++ G L + +A+GGF GS G+SV G GV +M
Sbjct: 189 IVAAIMSFTYSTIGLSLGIAQTVANGGFM-GSLTGISV-GTGVTSM 232
>12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551
Length = 475
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -1
Query: 234 LVVYVMSLEFT*YG*KLKLVTEIADGGFH*GSRYGVSVDGVGVKA 100
+V VMS ++ G L +V I++GG GS G+S+ GVGV +
Sbjct: 194 IVAAVMSFTYSGIGLSLGIVQTISNGGIQ-GSLTGISI-GVGVSS 236
>12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660
Length = 475
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -1
Query: 234 LVVYVMSLEFT*YG*KLKLVTEIADGGFH*GSRYGVSVDGVGVKA 100
+V VMS ++ G L +V I++GG GS G+S+ GVGV +
Sbjct: 194 IVAAVMSFTYSGIGLSLGIVQTISNGGIQ-GSLTGISI-GVGVSS 236
>06_03_0369 +
19975703-19975931,19976197-19976239,19976799-19976826,
19976977-19977114
Length = 145
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 129 VSVDGVGVKAMLSAEARDRSQGQADFVGCLCHELG 25
V+ DG+G + M EA G D + C HE G
Sbjct: 39 VAHDGIGQRRMRKEEAATHGGGCVDLLHCAMHEEG 73
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 108 RQHHPPRRHNGSPSGNRHQQFPSQA 182
R H PP H PS Q+FP +A
Sbjct: 178 RHHEPPMSHKKFPSSAGEQRFPDRA 202
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 413 ILIPYSSSMAFTNLVDTLANTIHRDAITASPSETAISNFRHKLQLYPYQ 559
+++P +S+A V+ A +H +P + A ++ H+L L P+Q
Sbjct: 504 VILPGLTSVASGKAVELFARMLHHPDEIHAPGDIAGTDTEHQLGLLPHQ 552
>10_06_0005 +
9459181-9459409,9459672-9459714,9460274-9460360,
9460669-9460810
Length = 166
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 129 VSVDGVGVKAMLSAEARDRSQGQADFVGCLCHELG 25
V+ DG+G + M EA G D + C HE G
Sbjct: 39 VAHDGIGQRHMRKEEAATHGGGCVDLLHCAMHEEG 73
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +1
Query: 121 HRDAITAPLVET---AISNFRHKLQLLPISGKFQAHDINNQQSQLVPGSALSMAFTNLVD 291
HRD + + E ++ H+L + + + +N QQ QLV S L NL+
Sbjct: 557 HRDGMESAEAEPTNKSVIQGTHELTVCQTTERLDTWKLNEQQQQLVDASGLG----NLIH 612
Query: 292 TLANTIHRDAITA 330
T I R A+ A
Sbjct: 613 TAGLVIDRIALMA 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,988,205
Number of Sequences: 37544
Number of extensions: 343573
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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