Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120830.seq
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18)                     30   1.5  
SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)                 30   1.9  

>SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18)
          Length = 379

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = +1

Query: 10  PYQVNSKLMT*TTNKVSLSL--ASVPGFCA*HGFHANTIHRDAITAPLVETAISNFRHKL 183
           P  + ++L+      +S+ L   S  G C   G     +H   I + L +  +S+  HKL
Sbjct: 278 PQYLKNELVRIEKRAISIILPRTSYDGACDLLGITPFEVHHGLICSKLFDEIVSDPNHKL 337

Query: 184 QLLPISGKFQAHDINNQQSQLVPGSALSMAFTNLVDTLAN 303
           + L       +H++  ++   +P    + A  +   ++AN
Sbjct: 338 KSLLPPSNVSSHNLRKKRPFALPRLKTNRAMNSFTFSMAN 377


>SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +1

Query: 55  VSLSLASVPGFCA*HGFHANTIHRDAITAPLVETAISNFRHKLQLLPISGKFQAHDINNQ 234
           + L   S  G C   G     +H   I + L +  +S+  HKL+ L       +H++  +
Sbjct: 640 IILPRTSYDGACDLLGITPLEVHHGLICSKLFDEIVSDPNHKLKSLLPPSNVSSHNLRKK 699

Query: 235 QSQLVPGSALSMAFTNLVDTLAN 303
           +   +P    + A  +   ++AN
Sbjct: 700 RPFALPHLKTNRAMNSFTFSMAN 722


>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
          Length = 642

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +1

Query: 55  VSLSLASVPGFCA*HGFHANTIHRDAITAPLVETAISNFRHKLQLLPISGKFQAHDINNQ 234
           + L   S  G C   G     +H   I + L +  +S+  HKL+ L       +H++  +
Sbjct: 558 IILPRTSYDGACDLLGITPLEVHHGLICSKLFDEIVSDPNHKLKSLLPPSNVSSHNLRKK 617

Query: 235 QSQLVPGSALSMAFTNLVDTLAN 303
           +   +P    + A  +   ++AN
Sbjct: 618 RPFALPHLKTNRAMNSFTFSMAN 640


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,636,758
Number of Sequences: 59808
Number of extensions: 363209
Number of successful extensions: 757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)