Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120830.seq
         (660 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    26   1.2  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.8  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    24   4.9  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          24   4.9  
AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            23   8.5  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 353  AISVTSFNFTHIR*IPSSCKILIPYSSSMAFTNLVDTLANTIHRDAITASPSETA 517
            ++ + +F   H++    S  I+  YS       L   LAN +HR+A ++S  + A
Sbjct: 1073 SMPIQAFEMIHLKTYQGS--IIQKYSRLSCILELDTMLANHLHREAFSSSELQKA 1125


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 93  LAWLSRQHHPPRRHNGSPSGNRHQQFPSQ 179
           LAW   Q + P+  N   + + HQQ  +Q
Sbjct: 406 LAWFGEQRNRPKDRNQPATLHHHQQVHNQ 434


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 102 LSRQHHPPRRHNGSPSG 152
           L+ QHH    H G PSG
Sbjct: 58  LASQHHALSHHAGEPSG 74


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 226 NNQQSQLVPGSALSMAFTNLVDTLANTIHRDAITAPLVETAISNFCHKLQLYPYQVNSKL 405
           N+Q    V  +   ++ T  V+T  N ++ + +T+P      S    + QL P Q++ +L
Sbjct: 166 NSQGENSVTYTLDDLSNTVPVNTQYNALNDNYVTSPQPSQVTSRQLQQQQLQPNQLHQQL 225


>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 17/74 (22%), Positives = 30/74 (40%)
 Frame = +1

Query: 163 SNFRHKLQLLPISGKFQAHDINNQQSQLVPGSALSMAFTNLVDTLANTIHRDAITAPLVE 342
           +N++   QL+    +     ++NQ+S        S+   +LVD    TI +      LV 
Sbjct: 149 NNWKETHQLIQECEQDHVQRLSNQRSHYKRIQCYSLKQRSLVDAFQKTIRKAEEVLNLVY 208

Query: 343 TAISNFCHKLQLYP 384
                   K Q++P
Sbjct: 209 NKYIFEWQKTQMFP 222


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,881
Number of Sequences: 2352
Number of extensions: 12312
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)