Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120830.seq
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    30   1.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U23514-2|AAM48532.1|  418|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
            protein F40G12.3 protein.
          Length = 1099

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 350  SAISVTSFNFTHIR*IPSSCKILIPYSSSMAFTNLVDTLANTIHRDAITASPSETAISN 526
            S I+ T+ NFT    I S      P S+S   + +    +++ H  A+T+S   +A+++
Sbjct: 839  STITATTINFTGTSEISSELTPTSPGSASKTTSGMAKRASSSKHPSAVTSSARSSAVTS 897


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +1

Query: 175  HKLQLLPISGKFQAHDINNQQSQLVPGSALS-MAFTNLVDTLANTIHRDAITAPLVETAI 351
            HK  +LPIS K Q   ++N + Q++    L+ +   N+   LAN      I   L+ +  
Sbjct: 2297 HKYYILPISAKNQI-SLDNLEKQILSVIPLTDVPICNIASALANNRSHFTIRNALIVSNS 2355

Query: 352  SNFCHKLQLYPYQVNSK 402
                 K++  P++V  K
Sbjct: 2356 GIVNSKMEGKPHRVAKK 2372


>U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical
           protein F48E8.7a protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 133 ITAPLVETAISNFRHKLQLLPISGKFQAHDINNQQSQLVPGSALSMAFTNLVDTL 297
           +T P+V   I +   KL+ L +SG  +   INN+  +++   +  +   +L D +
Sbjct: 269 LTQPIVTVIIHSIGEKLKKLNLSGTVRNFGINNKHIEILAAKSNYVTDLDLSDNV 323


>U23514-2|AAM48532.1|  418|Caenorhabditis elegans Hypothetical
           protein F48E8.7b protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 133 ITAPLVETAISNFRHKLQLLPISGKFQAHDINNQQSQLVPGSALSMAFTNLVDTL 297
           +T P+V   I +   KL+ L +SG  +   INN+  +++   +  +   +L D +
Sbjct: 266 LTQPIVTVIIHSIGEKLKKLNLSGTVRNFGINNKHIEILAAKSNYVTDLDLSDNV 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,654,811
Number of Sequences: 27780
Number of extensions: 272615
Number of successful extensions: 506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)