Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120830.seq
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.0  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.0  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 416 LIPYSSSMAFTNLVDTLANTIHRDAITASPSE 511
           ++  +SSM  T L+  L N    D +T  P E
Sbjct: 1   MLSNNSSMTQTELLQELTNDCRYDKMTRPPGE 32


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 398 PSSCKILIPYSSSMAFTNLVDTLANTIHRDAITASP 505
           PS+  ILI Y   + F +LV     TI  D +  SP
Sbjct: 12  PSTSFILINYFIFLYFNSLVRFRRFTIELDKVLESP 47


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 75  RSQGQADFVGCLCHELGIYLIWVK 4
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 250 GQADFVGCLCHELGIYLIWVK 188
           G  + VGC+C +     +W K
Sbjct: 72  GHCEKVGCICRKTSFKDLWDK 92


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 151 ETAISNFRHKLQLLPISGK 207
           ET IS+   +L+ LPISGK
Sbjct: 87  ETEISDQMLELRDLPISGK 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,392
Number of Sequences: 438
Number of extensions: 3125
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)