Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120829.seq
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    29   2.8  
At4g19540.1 68417.m02874 expressed protein                             28   4.9  
At5g03820.1 68418.m00351 GDSL-motif lipase/hydrolase family prot...    28   6.5  

>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -1

Query: 569 ELQCPQTIHDEFLIPHSKVALYIK 498
           E++C ++I++ F++ H KV+ YI+
Sbjct: 173 EIECARSIYERFVLCHPKVSAYIR 196


>At4g19540.1 68417.m02874 expressed protein
          Length = 313

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 508 RATLLWGIKNSSCIVCGHCN 567
           R  +L  ++N SC VC HCN
Sbjct: 204 RVPILGLVENMSCFVCPHCN 223


>At5g03820.1 68418.m00351 GDSL-motif lipase/hydrolase family protein
           similar to  family II lipase EXL3 (GI:15054386) and EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 354

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 456 CNARSVGCCHNGPNF 500
           CNARSVG C N  N+
Sbjct: 311 CNARSVGTCSNATNY 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,932
Number of Sequences: 28952
Number of extensions: 233722
Number of successful extensions: 362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)