Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120826.seq
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    29   2.9  
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica...    29   3.8  

>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
            domain-containing protein low similarity to SP|P41410 DNA
            repair protein rhp54 (RAD54 homolog) {Schizosaccharomyces
            pombe}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1256

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 554  NLIFRVS*LSKLLRFLNQIRPIRRFFGSFHRCLQFR 447
            NL+FRV    K+L F + I PIR F   F    +++
Sbjct: 1064 NLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWK 1099


>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
            domain-containing protein low similarity to SP|Q9U7E0
            Transcriptional regulator ATRX homolog {Caenorhabditis
            elegans}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1261

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 554  NLIFRVS*LSKLLRFLNQIRPIRRFFGSFHRCLQFR 447
            NLIFRV    K+L F + I PIR F   F    +++
Sbjct: 1070 NLIFRVVKREKILIFCHNIAPIRMFTELFENIFRWQ 1105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,906
Number of Sequences: 28952
Number of extensions: 208686
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)