Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120825.seq
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738     29   3.5  
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010           28   6.1  

>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
          Length = 707

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = +3

Query: 228 LGNSLYNPRFFSKNILHQG**KRNLFYLLIKLYKVNQFTYFGMISLPYINEFT 386
           + +S YNP  FSK +   G    NL Y    L   N+FT  G  SL YI++ T
Sbjct: 89  ISSSCYNP--FSKRMYSSGW-GFNLSYTPFMLSDSNKFTVVGCQSLAYISDPT 138


>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
          Length = 613

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 592 NRLLQSMCIPPNKFYKIYDSRASHAL 515
           NR+LQ  C+PP    +++D+R    L
Sbjct: 283 NRVLQQACVPPLSRQEVHDARVGSVL 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,251,705
Number of Sequences: 37544
Number of extensions: 303422
Number of successful extensions: 568
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)