Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120825.seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10842| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)                31   0.67 
SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_10842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -3

Query: 582 YRVCVYHQINFIKFMIAVHHMLC-LEDLKLG*NTNTERVFGKT 457
           +RV +Y+ +N+   ++A HH+LC L D   G +++T R+ G T
Sbjct: 84  WRVIIYY-VNYGMHLMACHHLLCALRDAFNGVSSSTMRITGYT 125


>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
          Length = 533

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -3

Query: 582 YRVCVYHQINFIKFMIAVHHMLC-LEDLKLG*NTNTERVFGKT 457
           +RV +Y+ +N+   ++A HH+LC L D   G +++T R+ G T
Sbjct: 38  WRVIIYN-VNYGMHLMACHHLLCALRDAFNGVSSSTMRITGYT 79


>SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 603 PVFTIDCYRVCVYHQINFIKFMIAVHHMLCLEDL 502
           P +   CY V V   +++   MI  HH +CL+++
Sbjct: 97  PSYNTACY-VAVVKAVHWENLMIEYHHTICLQEI 129


>SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 318 KLYKVNQFTYFGMISLPYINEFTPFIYKPIF*LFCG*YY 434
           K YK    TY      PYI  + P  YKP    +C  Y+
Sbjct: 422 KYYKPYIQTYCPKYHKPYIQTYCPKYYKPYIQTYCPKYH 460


>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 497  LVKIQTQNACLERLSTYNGKKIILATKQLKDWFVNKWC 384
            L +I+ ++   + L+  + KK++  TK+ +DWF NK C
Sbjct: 943  LGQIEQKDEKYDHLAEEDVKKVVKMTKEKEDWF-NKKC 979


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,181
Number of Sequences: 59808
Number of extensions: 393419
Number of successful extensions: 827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)