Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120825.seq
(692 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.1
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 8.4
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 8.4
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 8.4
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 627 C*KWPYIKPVFTIDCYRVCVYHQINFIKFMIAVHHMLCL 511
C PY+ FTI R +Y+ N I + + M L
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 627 C*KWPYIKPVFTIDCYRVCVYHQINFIKFMIAVHHMLCL 511
C PY+ FTI R +Y+ N I + + M L
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 627 C*KWPYIKPVFTIDCYRVCVYHQINFIKFMIAVHHMLCL 511
C PY+ FTI R +Y+ N I + + M L
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 627 C*KWPYIKPVFTIDCYRVCVYHQINFIKFMIAVHHMLCL 511
C PY+ FTI R +Y+ N I + + M L
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 627 C*KWPYIKPVFTIDCYRVCVYHQINFIKFMIAVHHMLCL 511
C PY+ FTI R +Y+ N I + + M L
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 627 C*KWPYIKPVFTIDCYRVCVYHQINFIKFMIAVHHMLCL 511
C PY+ FTI R +Y+ N I + + M L
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 627 C*KWPYIKPVFTIDCYRVCVYHQINFIKFMIAVHHMLCL 511
C PY+ FTI R +Y+ N I + + M L
Sbjct: 244 CCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 282
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 627 C*KWPYIKPVFTIDCYRVCVYHQINFIKFMIAVHHMLCL 511
C PY+ FTI R +Y+ N I + + M L
Sbjct: 244 CCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 282
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 105 FAGQHNTGMHFLH 67
+AG+H M FLH
Sbjct: 22 YAGRHTADMDFLH 34
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 105 FAGQHNTGMHFLH 67
+AG+H M FLH
Sbjct: 22 YAGRHTADMDFLH 34
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 409 FNCFVANIIFFPLYVESLSKH 471
F + +I P+Y+ES S H
Sbjct: 120 FQLYPMDIQICPIYIESFSYH 140
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,203
Number of Sequences: 438
Number of extensions: 4320
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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